Evidence map›Paper›PMID 36912927›Full record

ArticleDiabetologia2023

Methylation of histone H3 lysine 4 is required for maintenance of beta cell function in adult mice.

Ben Vanderkruk, Nina Maeshima, Daniel J Pasula, Meilin An, Cassandra L McDonald, Priya Suresh, Dan S Luciani, Francis C Lynn, Brad G Hoffman

Open access · hybridAbstract read
In one paragraph

Article in Diabetologia, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. The Wild West of spike-in normalization.Nature biotechnology · 2024
    Article
  8. Review
  9. Review
  10. Role of H3K4 monomethylation in gene regulation.Current opinion in genetics & development · 2024
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ben VanderkrukDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0002-0606-0376
Nina MaeshimaDepartment of Surgery, University of British Columbia, Vancouver, BC, Canada.
Daniel J PasulaDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0002-6319-3757
Meilin AnDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0003-3498-2674
Cassandra L McDonaldDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0001-5559-2494
Priya SureshDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0002-5649-2054
Dan S LucianiDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0002-4318-4159
Francis C LynnDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada.ORCID https://orcid.org/0000-0001-9318-1063
Brad G HoffmanDiabetes Research Group, British Columbia Children's Hospital Research Institute, Vancouver, BC, Canada. brad.hoffman@ubc.ca.ORCID https://orcid.org/0000-0002-5420-4493
University of British Columbia · CABC Children's Hospital · CAUniversity of British Columbia Hospital · CA

Funding

CIHR RN310864 – 375894
6 · The paper itself

Abstract

aims/hypothesisBeta cells control glucose homeostasis via regulated production and secretion of insulin. This function arises from a highly specialised gene expression programme that is established during development and then sustained, with limited flexibility, in terminally differentiated cells. Dysregulation of this programme is seen in type 2 diabetes but mechanisms that preserve gene expression or underlie its dysregulation in mature cells are not well resolved. This study investigated whether methylation of histone H3 lysine 4 (H3K4), a marker of gene promoters with unresolved functional importance, is necessary for the maintenance of mature beta cell function.

methodsBeta cell function, gene expression and chromatin modifications were analysed in conditional Dpy30 knockout mice, in which H3K4 methyltransferase activity is impaired, and in a mouse model of diabetes.

resultsH3K4 methylation maintains expression of genes that are important for insulin biosynthesis and glucose responsiveness. Deficient methylation of H3K4 leads to a less active and more repressed epigenome profile that locally correlates with gene expression deficits but does not globally reduce gene expression. Instead, developmentally regulated genes and genes in weakly active or suppressed states particularly rely on H3K4 methylation. We further show that H3K4 trimethylation (H3K4me3) is reorganised in islets from the Lepr CONCLUSIONS/

interpretationSustained methylation of H3K4 is critical for the maintenance of beta cell function. Redistribution of H3K4me3 is linked to gene expression changes that are implicated in diabetes pathology.

Indexed as

Diabetes Mellitus, Type 2InsulinsAnimalsHistone-Lysine N-MethyltransferaseHistonesLysineMethylationMiceHistone-Lysine N-MethyltransferaseHistonesInsulinsLysineBeta cellChromatinCOMPASSDPY30H3K4me3InsulinTranscriptionType 2 diabetes

Identifiers

PMID36912927
PMCPMC10163146
OpenAlexW4324020764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.