Evidence map›Paper›PMID 36912614›Full record

ArticleProteins2023

Domain shuffling of a highly mutable ligand-binding fold drives adhesin generation across the bacterial kingdom.

Rob Barringer, Alice E Parnell, Aleix Lafita, Vivian Monzon, Catherine R Back, Mariusz Madej, Jan Potempa, Angela H Nobbs, Steven G Burston, Alex Bateman and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Proteins, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. A global survey of intramolecular isopeptide bonds.Protein science : a publication of the Protein Society · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Rob BarringerSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Alice E ParnellSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Aleix LafitaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.ORCID 0000-0003-1549-3162
Vivian MonzonEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
Catherine R BackSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Mariusz MadejDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Krakow, Poland.
Jan PotempaDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Krakow, Poland.
Angela H NobbsBristol Dental School, University of Bristol, Lower Maudlin Street, Bristol, BS1 2LY, UK.ORCID 0000-0003-3813-4410
Steven G BurstonSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Alex BatemanEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
Paul R RaceSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.ORCID 0000-0003-0184-5630
University of Bristol · GBEuropean Bioinformatics Institute · GBJagiellonian University · PLUniversity Of Bristol Dental Hospital · GB

Funding

Biotechnology and Biological Sciences Research CouncilBiotechnology and Biological Sciences Research Council BB/L01386X/1Biotechnology and Biological Sciences Research Council BB/M012107/1Biotechnology and Biological Sciences Research Council BB/T001968/1Biotechnology and Biological Sciences Research Council BB/T008741/1British Heart Foundation PG/17/10/32829
6 · The paper itself

Abstract

Bacterial fibrillar adhesins are specialized extracellular polypeptides that promote the attachment of bacteria to the surfaces of other cells or materials. Adhesin-mediated interactions are critical for the establishment and persistence of stable bacterial populations within diverse environmental niches and are important determinants of virulence. The fibronectin (Fn)-binding fibrillar adhesin CshA, and its paralogue CshB, play important roles in host colonization by the oral commensal and opportunistic pathogen Streptococcus gordonii. As paralogues are often catalysts for functional diversification, we have probed the early stages of structural and functional divergence in Csh proteins by determining the X-ray crystal structure of the CshB adhesive domain NR2 and characterizing its Fn-binding properties in vitro. Despite sharing a common fold, CshB_NR2 displays an ~1.7-fold reduction in Fn-binding affinity relative to CshA_NR2. This correlates with reduced electrostatic charge in the Fn-binding cleft. Complementary bioinformatic studies reveal that homologues of CshA/B_NR2 domains are widely distributed in both Gram-positive and Gram-negative bacteria, where they are found housed within functionally cryptic multi-domain polypeptides. Our findings are consistent with the classification of Csh adhesins and their relatives as members of the recently defined polymer adhesin domain (PAD) family of bacterial proteins.

Indexed as

Anti-Bacterial AgentsMembrane ProteinsAdhesins, BacterialBacterial ProteinsGram-Negative BacteriaGram-Positive BacteriaLigandsAdhesins, BacterialAnti-Bacterial AgentsBacterial ProteinsLigandsMembrane ProteinsadhesinbioinformaticsfibrilStreptococcus gordoniiX-ray crystallography

Identifiers

PMID36912614
PMCPMC10952558
OpenAlexW4324020744

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.