Evidence map›Paper›PMID 36909821›Full record

ArticlePNAS nexus2023

Polysulfide metabolizing enzymes influence SqrR-mediated sulfide-induced transcription by impacting intracellular polysulfide dynamics.

Takayuki Shimizu, Tomoaki Ida, Giuliano T Antelo, Yuta Ihara, Joseph N Fakhoury, Shinji Masuda, David P Giedroc, Takaaki Akaike, Daiana A Capdevila, Tatsuru Masuda

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Cyanide overproduction impairs cellular bioenergetics in Down syndrome.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. In the AlphaproteobacteriumAntioxidants (Basel, Switzerland) · 2023
    Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Takayuki ShimizuGraduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.ORCID https://orcid.org/0000-0002-2956-9386
Tomoaki IdaDepartment of 8 Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan.ORCID https://orcid.org/0000-0002-4443-6127
Giuliano T AnteloDepartment of Chemistry, Indiana University, 800 E. Kirkwood Dr, Bloomington, IN 47405-7102, USA.ORCID https://orcid.org/0000-0001-6774-8812
Yuta IharaDepartment of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.
Joseph N FakhouryDepartment of Chemistry, Indiana University, 800 E. Kirkwood Dr, Bloomington, IN 47405-7102, USA.ORCID https://orcid.org/0000-0003-2071-9410
Shinji MasudaDepartment of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.ORCID https://orcid.org/0000-0002-5349-4927
David P GiedrocDepartment of Chemistry, Indiana University, 800 E. Kirkwood Dr, Bloomington, IN 47405-7102, USA.ORCID https://orcid.org/0000-0002-2342-1620
Takaaki AkaikeDepartment of 8 Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan.ORCID https://orcid.org/0000-0002-0623-1710
Daiana A CapdevilaDepartment of Chemistry, Indiana University, 800 E. Kirkwood Dr, Bloomington, IN 47405-7102, USA.ORCID https://orcid.org/0000-0002-0500-1016
Tatsuru MasudaGraduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.
Consejo Nacional de Investigaciones Científicas y Técnicas · ARIndiana University Bloomington · USThe University of Tokyo · JPTohoku University · JPTokyo Institute of Technology · JP

Funding

Transition Metal Homeostasis and Reactive Sulfur Species in Bacterial PathogensR35GM118157 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DAVID P. GIEDROC · 2016 to 2026
$5.9M
NIGMS NIH HHS R35 GM118157
6 · The paper itself

Abstract

Sulfide plays essential roles in controlling various physiological activities in almost all organisms. Although recent evidence has demonstrated that sulfide is endogenously generated and metabolized into polysulfides inside the cells, the relationship between polysulfide metabolism and polysulfide-sensing mechanisms is not well understood. To better define this interplay between polysulfide metabolism and sensing in cells, we investigated the role of polysulfide-metabolizing enzymes such as sulfide:quinone oxidoreductase (SQR) on the temporal dynamics of cellular polysulfide speciation and on the transcriptional regulation by the persulfide-responsive transcription factor SqrR in

Indexed as

polysulfideproteobacteriasignal transductionsulfur metabolism

Identifiers

PMID36909821
PMCPMC9995734
OpenAlexW4319926424

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.