Evidence map›Paper›PMID 36909566›Full record

ArticlebioRxiv : the preprint server for biology2023

Bacteriophage-mediated lysis supports robust growth of amino acid auxotrophs.

Gordon J Pherribo, Michiko E Taga

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gordon J PherriboDepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, CA 94720 U.S.A.
Michiko E TagaDepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, CA 94720 U.S.A.
University of California, Berkeley · US

Funding

Microbial Corrinoid Metabolism Across Scales: From Molecular Specificity to Community DynamicsR35GM139633 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Michiko E. Taga · 2021 to 2026
$3.0M
NIGMS NIH HHS R35 GM139633
6 · The paper itself

Abstract

The majority of microbes are auxotrophs - organisms unable to synthesize one or more metabolites required for their growth. Auxotrophy is thought to confer an evolutionary advantage, yet auxotrophs must rely on other organisms that produce the metabolites they require. The mechanisms of metabolite provisioning by "producers" remain unknown. In particular, it is unclear how metabolites such as amino acids and cofactors, which are found inside the cell, are released by producers to become available to auxotrophs. Here, we explore metabolite secretion and cell lysis as two distinct possible mechanisms that result in release of intracellular metabolites from producer cells. We measured the extent to which secretion or lysis of

Identifiers

PMID36909566
PMCPMC10002711
OpenAlexW4323049006

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.