Evidence map›Paper›PMID 36908760›Full record

ArticleJournal of biomedical optics2023

Unrolled-DOT: an interpretable deep network for diffuse optical tomography.

Yongyi Zhao, Ankit Raghuram, Fay Wang, Stephen Hyunkeol Kim, Andreas Hielscher, Jacob T Robinson, Ashok Veeraraghavan

Open access · goldAbstract read
In one paragraph

Article in Journal of biomedical optics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yongyi ZhaoRice University, Department of Electrical and Computer Engineering, Houston, Texas, United States.ORCID 0000-0002-4242-6910
Ankit RaghuramRice University, Department of Electrical and Computer Engineering, Houston, Texas, United States.
Fay WangColumbia University, Department of Biomedical Engineering, New York, New York, United States.ORCID 0000-0003-2388-9941
Stephen Hyunkeol KimColumbia University Irvine Medical Center, Department of Radiology, New York, New York, United States.
Andreas HielscherNew York University - Tandon School of Engineering, Department of Biomedical Engineering, New York, New York, United States.
Jacob T RobinsonRice University, Department of Electrical and Computer Engineering, Houston, Texas, United States.ORCID 0000-0002-3509-3054
Ashok VeeraraghavanRice University, Department of Electrical and Computer Engineering, Houston, Texas, United States.
Rice University · USNew York University · USColumbia University · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Significance: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering media. ToF-DOT and many traditional DOT methods require an image reconstruction algorithm. Unfortunately, this algorithm often requires long computational runtimes and may produce lower quality reconstructions in the presence of model mismatch or improper hyperparameter tuning. Aim: We used a data-driven unrolled network as our ToF-DOT inverse solver. The unrolled network is faster than traditional inverse solvers and achieves higher reconstruction quality by accounting for model mismatch. Approach: Our model "Unrolled-DOT" uses the learned iterative shrinkage thresholding algorithm. In addition, we incorporate a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to further increase the reconstruction quality. We trained and tested our model on simulated and real-world data and benchmarked against physics-based and learning-based inverse solvers. Results: In experiments on real-world data, Unrolled-DOT outperformed learning-based algorithms and achieved over 10× reduction in runtime and mean-squared error, compared to traditional physics-based solvers. Conclusion: We demonstrated a learning-based ToF-DOT inverse solver that achieves state-of-the-art performance in speed and reconstruction quality, which can aid in future applications for noninvasive biomedical imaging.

Indexed as

Image Processing, Computer-AssistedTomography, OpticalAlgorithmsFunctional NeuroimagingMathematicsmachine learningoptical tomographytime-of-flight imaging

Identifiers

PMID36908760
PMCPMC9995139
OpenAlexW4323539094

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.