Evidence map›Paper›PMID 36908580›Full record

ArticleAdvances in drug and alcohol research2022

Hippocampal ceRNA networks from chronic intermittent ethanol vapor-exposed male mice and functional analysis of top-ranked lncRNA genes for ethanol drinking phenotypes.

S L Plasil, V J Collins, A M Baratta, S P Farris, G E Homanics

Open access · diamondFull text read
In one paragraph

Article in Advances in drug and alcohol research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

S L PlasilDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
V J CollinsDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
A M BarattaCenter for Neuroscience, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
S P FarrisCenter for Neuroscience, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
G E HomanicsDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.
Division of Chemistry · USUniversity of Pittsburgh · USCenter for Neurosciences · US

Funding

Role of noncoding RNA in alcohol actionU01AA020889 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Sean P Farris, Gregg E. Homanics · 2011 to 2026
$7.1M
Next Generation Sequencing of Human Alcoholic BrainU01AA020926 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI Roy DAYNE MAYFIELD · 2011 to 2026
$6.7M
Ethanol Mechanisms in GABAAR Gene Targeted MiceR37AA010422 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMANICS, GREGG E. · 2010 to 2019
$4.4M
PREDOCTORAL TRAINING IN PHARMACOLOGICAL SCIENCEST32GM008424 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PAGANO, PATRICK J · 1994 to 2019
$3.4M
ETHANOL MECHANISMS IN GABAAR GENE TARGETED MICER01AA010422 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMANICS, GREGG E. · 1995 to 2008
$3.1M
The Role of lncRNA MALAT1 in Controlling Behavior and Neuroinflammation in Alcohol Use DisorderF31AA029942 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BARATTA, ANNALISA · 2022 to 2023
$92k
lncRNA Gas5 dysregulation alters ethanol drinking behavior and ethanol-related phenotypesF31AA030176 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PLASIL, SONJA LOREAN · 2022 to 2022
$47k
NIAAA NIH HHS F31 AA029942NIAAA NIH HHS F31 AA030176NIAAA NIH HHS R01 AA010422NIAAA NIH HHS R37 AA010422NIAAA NIH HHS U01 AA020889NIAAA NIH HHS U01 AA020926NIGMS NIH HHS T32 GM008424
6 · The paper itself

Abstract

The molecular mechanisms regulating the development and progression of alcohol use disorder (AUD) are largely unknown. While noncoding RNAs have previously been implicated as playing key roles in AUD, long-noncoding RNA (lncRNA) remains understudied in relation to AUD. In this study, we first identified ethanol-responsive lncRNAs in the mouse hippocampus that are transcriptional network hub genes. Microarray analysis of lncRNA, miRNA, circular RNA, and protein coding gene expression in the hippocampus from chronic intermittent ethanol vapor- or air- (control) exposed mice was used to identify ethanol-responsive competing endogenous RNA (ceRNA) networks. Highly interconnected lncRNAs (genes that had the strongest overall correlation to all other dysregulated genes identified) were ranked. The top four lncRNAs were novel, previously uncharacterized genes named

Indexed as

Alcohol use disorderCRISPR/Cas9epigeneticsethanol consumptionknockoutlong-noncoding RNAmutagenesistranscriptome

Identifiers

PMID36908580
PMCPMC10004261
OpenAlexW4310671677

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reference markers read3
measurements read142
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.