Evidence map›Paper›PMID 36907892›Full record

ArticleDiabetologia2023

Integrated glycomics and genetics analyses reveal a potential role for N-glycosylation of plasma proteins and IgGs, as well as the complement system, in the development of type 1 diabetes.

Najda Rudman, Simranjeet Kaur, Vesna Simunović, Domagoj Kifer, Dinko Šoić, Toma Keser, Tamara Štambuk, Lucija Klarić, Flemming Pociot, Grant Morahan and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Diabetologia, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Najda RudmanFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0002-8044-866X
Simranjeet KaurSteno Diabetes Center Copenhagen, Herlev, Denmark.ORCID https://orcid.org/0000-0003-0490-1028
Vesna SimunovićFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0003-0793-6023
Domagoj KiferFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0002-7956-3484
Dinko ŠoićFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.
Toma KeserFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0003-2759-3742
Tamara ŠtambukFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.ORCID https://orcid.org/0000-0003-3174-120X
Lucija KlarićInstitute of Genetics and Cancer, MRC Human Genetics Unit, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0000-0003-3105-8929
Flemming PociotSteno Diabetes Center Copenhagen, Herlev, Denmark.ORCID https://orcid.org/0000-0003-3274-5448
Grant MorahanCentre for Diabetes Research, The Harry Perkins Institute for Medical Research, University of Western Australia, Perth, WA, Australia. grant.morahan@perkins.org.au.ORCID https://orcid.org/0000-0002-8562-7325
Olga GornikFaculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia. ogornik@pharma.hr.ORCID https://orcid.org/0000-0002-6157-6252
University of Zagreb · HRInstitute of Genetics and Cancer · GBSteno Diabetes Centers · DKThe University of Melbourne · AUUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aims/hypothesisWe previously demonstrated that N-glycosylation of plasma proteins and IgGs is different in children with recent-onset type 1 diabetes compared with their healthy siblings. To search for genetic variants contributing to these changes, we undertook a genetic association study of the plasma protein and IgG N-glycome in type 1 diabetes.

methodsA total of 1105 recent-onset type 1 diabetes patients from the Danish Registry of Childhood and Adolescent Diabetes were genotyped at 183,546 genetic markers, testing these for genetic association with variable levels of 24 IgG and 39 plasma protein N-glycan traits. In the follow-up study, significant associations were validated in 455 samples.

resultsThis study confirmed previously known plasma protein and/or IgG N-glycosylation loci (candidate genes MGAT3, MGAT5 and ST6GAL1, encoding beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase and ST6 beta-galactoside alpha-2,6-sialyltransferase 1 gene, respectively) and identified novel associations that were not previously reported for the general European population. First, novel genetic associations of IgG-bound glycans were found with SNPs on chromosome 22 residing in two genomic intervals close to candidate gene MGAT3; these include core fucosylated digalactosylated disialylated IgG N-glycan with bisecting N-acetylglucosamine (GlcNAc) (p CONCLUSIONS/

interpretationThis study identified novel genetic associations driving the distinct N-glycosylation of plasma proteins and IgGs identified previously at type 1 diabetes onset. Our results highlight the importance of further exploring the potential role of N-glycosylation and its influence on complement activation and type 1 diabetes susceptibility.

Indexed as

Diabetes Mellitus, Type 1AdolescentBlood ProteinsChildFollow-Up StudiesGlycomicsGlycosylationHumansImmunoglobulin GN-AcetylglucosaminyltransferasesPolysaccharidesBlood ProteinsImmunoglobulin GN-AcetylglucosaminyltransferasesPolysaccharidesC3GWASIgG N-glycosylationMGAT3plasma protein N-glycosylationST6GAL1type 1 diabetes

Identifiers

PMID36907892
PMCPMC10163086
OpenAlexW4324017605

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.