Evidence map›Paper›PMID 36905328›Full record

ArticleHuman molecular genetics2023

Variant spectrum of von Hippel-Lindau disease and its genomic heterogeneity in Japan.

Kenji Tamura, Yuki Kanazashi, Chiaki Kawada, Yuya Sekine, Kazuhiro Maejima, Shingo Ashida, Takashi Karashima, Shohei Kojima, Nickolas F Parrish, Shunichi Kosugi and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Observational
  6. Review
  7. Article
  8. Article
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  11. Article
  12. Hereditary Renal Cancer Syndromes.Medical sciences (Basel, Switzerland) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Kenji TamuraDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Yuki KanazashiRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Chiaki KawadaDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Yuya SekineRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Kazuhiro MaejimaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Shingo AshidaDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Takashi KarashimaDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Shohei KojimaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Nickolas F ParrishRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Shunichi KosugiRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Chikashi TeraoRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Shota SasagawaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Masashi FujitaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Todd A JohnsonRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Yukihide MomozawaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Keiji InoueDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Taro ShuinDepartment of Urology, Kochi Medical School, Kochi University, Nankoku, Japan.
Hidewaki NakagawaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
RIKEN Center for Integrative Medical Sciences · JPKōchi University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Von Hippel-Lindau (VHL) disease is an autosomal dominant, inherited syndrome with variants in the VHL gene, causing predisposition to multi-organ neoplasms with vessel abnormality. Germline variants in VHL can be detected in 80-90% of patients clinically diagnosed with VHL disease. Here, we summarize the results of genetic tests for 206 Japanese VHL families, and elucidate the molecular mechanisms of VHL disease, especially in variant-negative unsolved cases. Of the 206 families, genetic diagnosis was positive in 175 families (85%), including 134 families (65%) diagnosed by exon sequencing (15 novel variants) and 41 (20%) diagnosed by multiplex ligation-dependent probe amplification (MLPA) (one novel variant). The deleterious variants were significantly enriched in VHL disease Type 1. Interestingly, five synonymous or non-synonymous variants within exon 2 caused exon 2 skipping, which is the first report of exon 2 skipping caused by several missense variants. Whole genome and target deep sequencing analysis were performed for 22 unsolved cases with no variant identified and found three cases with VHL mosaicism (variant allele frequency: 2.5-22%), one with mobile element insertion in the VHL promoter region, and two with a pathogenic variant of BAP1 or SDHB. The variants associated with VHL disease are heterogeneous, and for more accuracy of the genetic diagnosis of VHL disease, comprehensive genome and DNA/RNA analyses are required to detect VHL mosaicism, complicated structure variants and other related gene variants.

Indexed as

von Hippel-Lindau DiseaseDNA Mutational AnalysisGenomicsHumansJapanPedigreeVon Hippel-Lindau Tumor Suppressor ProteinVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID36905328
PMCPMC10244221
OpenAlexW4323921414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.