Evidence map›Paper›PMID 36903986›Full record

ArticlePlants (Basel, Switzerland)2023

Metabarcoding Reveals Impact of Different Land Uses on Fungal Diversity in the South-Eastern Region of Antioquia, Colombia.

Raul Aranguren, Samuele Voyron, Fabrizio Ungaro, Julio Cañón, Erica Lumini

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Article in Plants (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Raul ArangurenGAIA Research Group, Universidad de Antioquia, Medellín 050010, Colombia.
Samuele VoyronDepartment of Life Sciences and Systems Biology, University of Turin, 10124 Turin, Italy.ORCID 0000-0001-6921-9519
Fabrizio UngaroInstitute for Bio-Economy (IBE), National Research Council (CNR), 50018 Florence, Italy.
Julio CañónGAIA Research Group, Universidad de Antioquia, Medellín 050010, Colombia.ORCID 0000-0001-8041-2774
Erica LuminiInstitute for Sustainable Plant Protection (IPSP), National Research Council (CNR), 10125 Turin, Italy.ORCID 0000-0001-5864-8561

Funding

Colombian Ministry of Science, Technology and Innovation "COLCIENCIAS" Grant Agreement number 727 of 2015
6 · The paper itself

Abstract

Changes in soil fungal communities caused by land use have not been sufficiently studied in South American Andosols, which are considered key food production areas. Since fungal communities play an important role in soil functionality, this study analysed 26 soil samples of Andosols collected from locations devoted to conservation, agriculture and mining activities in Antioquia, Colombia, to establish differences between fungal communities as indicators of soil biodiversity loss using Illumina MiSeq metabarcoding on nuclear ribosomal ITS2 region. A non-metric multidimensional scaling allowed to explore driver factors of changes in fungal communities, while the significance of these variations was assessed by PERMANOVA. Furthermore, the effect size of land use over relevant taxa was quantified. Our results suggest a good coverage of fungal diversity with a detection of 353,312 high-quality ITS2 sequences. We found strong correlations of Shannon and Fisher indexes with dissimilarities on fungal communities (r = 0.94). These correlations allow grouping soil samples according to land use. Variations in temperature, air humidity and organic matter content lead to changes in abundances of relevant orders (Wallemiales and Trichosporonales). The study highlights specific sensitivities of fungal biodiversity features in tropical Andosols, which may serve as a basis for robust assessments of soil quality in the region.

Indexed as

alpha diversityColombian Andosolsfungal ITS2 metabarcodingrelevant fungal taxaresponse ratio

Identifiers

PMID36903986
PMCPMC10005449

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.