Evidence map›Paper›PMID 36902448›Full record

ArticleInternational journal of molecular sciences2023

Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway.

Yu Mori, Kazuko Ueno, Daisuke Chiba, Ko Hashimoto, Yosuke Kawai, Kazuyoshi Baba, Hidetatsu Tanaka, Takashi Aki, Masanori Ogasawara, Naoto Shibasaki and 3 more

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In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yu MoriDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.ORCID 0000-0002-8225-4690
Kazuko UenoGenome Medical Science Project, National Center for Global Health and Medicine, Tokyo 162-8655, Japan.
Daisuke ChibaDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.
Ko HashimotoDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.ORCID 0000-0002-9644-054X
Yosuke KawaiGenome Medical Science Project, National Center for Global Health and Medicine, Tokyo 162-8655, Japan.
Kazuyoshi BabaDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.
Hidetatsu TanakaDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.
Takashi AkiDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.ORCID 0000-0002-4751-5904
Masanori OgasawaraDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.
Naoto ShibasakiDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.
Katsushi TokunagaGenome Medical Science Project, National Center for Global Health and Medicine, Tokyo 162-8655, Japan.ORCID 0000-0001-5501-0503
Toshimi AizawaDepartment of Orthopaedic Surgery, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan.ORCID 0000-0003-1571-5618
Masao NagasakiHuman Biosciences Unit for the Top Global Course Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto 606-8507, Japan.ORCID 0000-0002-4292-8785

Funding

Japan Agency for Medical Research and Development JP16 km0405205 and JP19 km0405501Japan Agency for Medical Research and Development JP16km0405205, JP19km0405501, JP20ek0109492, JP21wm0425009, JP20ek0109485, JP18ek0109348, JP21ek0109548, and JP22fk0210111Japan Society for the Promotion of Science 20K09404Japan Society for the Promotion of Science 21H02681
6 · The paper itself

Abstract

This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the UK Biobank data with 3315 cases and matched 74,038 controls. Gene set enrichment analyses (GSEAs) of both the genetics and transcriptome of DDH were performed. Transcriptome analysis of cartilage specimens from DDH-associated osteoarthritis and femoral neck fractures was performed as a control. Most of the lead variants were very low-frequency ones in the UK, and variants in the Japanese GWAS could not be replicated with the UK GWAS. We assigned DDH-related candidate variants to 42 and 81 genes from the Japanese and UK GWASs, respectively, using functional mapping and annotation. GSEA of gene ontology, disease ontology, and canonical pathways identified the most enriched pathway to be the ferroptosis signaling pathway, both in the Japanese gene set as well as the Japanese and UK merged set. Transcriptome GSEA also identified significant downregulation of genes in the ferroptosis signaling pathway. Thus, the ferroptosis signaling pathway may be associated with the pathogenic mechanism of DDH.

Indexed as

Developmental Dysplasia of the HipFerroptosisEast Asian PeopleGenome-Wide Association StudyHumansSignal TransductionTranscriptomecartilagedevelopmental dysplasia of the hipferroptosis signaling pathwaygenome-wide association studyJaponica arraypsychiatric disordersUK Biobank

Identifiers

PMID36902448
PMCPMC10003185

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.