Evidence map›Paper›PMID 36901742›Full record

ArticleInternational journal of molecular sciences2023

Identification of Novel Core Genes Involved in Malignant Transformation of Inflamed Colon Tissue Using a Computational Biology Approach and Verification in Murine Models.

Andrey V Markov, Innokenty A Savin, Marina A Zenkova, Aleksandra V Sen'kova

Full text read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. The roles and heterogeneity of CD8International journal of molecular medicine · 2026
    Review
  2. Review
  3. SoloxoloneInternational journal of molecular sciences · 2025
    Article
  4. Article
  5. Article
  6. Selected Cytokines and Metalloproteinases in Inflammatory Bowel Disease.International journal of molecular sciences · 2023
    Review
  7. Solving the Puzzle: Molecular Research in Inflammatory Bowel Diseases.International journal of molecular sciences · 2023
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrey V MarkovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrent'ev Ave., 8, 630090 Novosibirsk, Russia.ORCID 0000-0001-7569-9555
Innokenty A SavinInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrent'ev Ave., 8, 630090 Novosibirsk, Russia.ORCID 0000-0002-3032-858X
Marina A ZenkovaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrent'ev Ave., 8, 630090 Novosibirsk, Russia.ORCID 0000-0003-4044-1049
Aleksandra V Sen'kovaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrent'ev Ave., 8, 630090 Novosibirsk, Russia.ORCID 0000-0001-5729-9910

Funding

Russian Science Foundation 19-74-30011Russian state-funded budget project of ICBFM SB RAS 121031300044-5
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) is a complex and multifactorial systemic disorder of the gastrointestinal tract and is strongly associated with the development of colorectal cancer. Despite extensive studies of IBD pathogenesis, the molecular mechanism of colitis-driven tumorigenesis is not yet fully understood. In the current animal-based study, we report a comprehensive bioinformatics analysis of multiple transcriptomics datasets from the colon tissue of mice with acute colitis and colitis-associated cancer (CAC). We performed intersection of differentially expressed genes (DEGs), their functional annotation, reconstruction, and topology analysis of gene association networks, which, when combined with the text mining approach, revealed that a set of key overexpressed genes involved in the regulation of colitis (

Indexed as

ColitisColorectal NeoplasmsInflammatory Bowel DiseasesADAM ProteinsAnimalsAzoxymethaneCell Transformation, NeoplasticColonDextran SulfateDisease Models, AnimalHumansMatrix Metalloproteinase 13Matrix Metalloproteinase 3Matrix Metalloproteinase 7Matrix Metalloproteinase 9Membrane ProteinsADAM8 protein, humanADAM ProteinsAzoxymethaneDextran SulfateMatrix Metalloproteinase 13Matrix Metalloproteinase 3Matrix Metalloproteinase 7Matrix Metalloproteinase 9Membrane ProteinscDNA microarraycolitiscolitis-associated cancercolon adenocarcinomacolorectal cancerCrohn’s diseaseinflammatory bowel diseasemicroarraytransciptomics analysisulcerative colitis

Identifiers

PMID36901742
PMCPMC10001800

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.