Evidence map›Paper›PMID 36900252›Full record

ArticleCancers2023

Dynamic NIR Fluorescence Imaging and Machine Learning Framework for Stratifying High vs. Low Notch-Dll4 Expressing Host Microenvironment in Triple-Negative Breast Cancer.

Shayan Shafiee, Jaidip Jagtap, Mykhaylo Zayats, Jonathan Epperlein, Anjishnu Banerjee, Aron Geurts, Michael Flister, Sergiy Zhuk, Amit Joshi

Open access · goldFull text read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Shayan ShafieeDepartment of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Jaidip JagtapDepartment of Radiology, Mayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0003-1839-862X
Mykhaylo ZayatsIBM Research Europe, D15 HN66 Dublin, Ireland.
Jonathan EpperleinIBM Research Europe, D15 HN66 Dublin, Ireland.ORCID 0000-0003-2912-0543
Anjishnu BanerjeeDivision of Biostatistics, Medical College of Wisconsin, Milwaukee, WI 53226, USA.ORCID 0000-0002-6898-9148
Aron GeurtsDepartment of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Michael FlisterDepartment of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Sergiy ZhukIBM Research Europe, D15 HN66 Dublin, Ireland.
Amit JoshiDepartment of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI 53226, USA.
IBM Research - Ireland · IEMedical College of Wisconsin · USMarquette University · USMayo Clinic · US

Funding

Leveraging genetic mapping for personalized targeting of breast cancer microenvironmentR01CA193343 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI Amit Joshi · 2015 to 2026
$3.5M
NCI NIH HHS R01 CA193343NIH HHS 2R01CA193343
6 · The paper itself

Abstract

Delta like canonical notch ligand 4 (Dll4) expression levels in tumors are known to affect the efficacy of cancer therapies. This study aimed to develop a model to predict Dll4 expression levels in tumors using dynamic enhanced near-infrared (NIR) imaging with indocyanine green (ICG). Two rat-based consomic xenograft (CXM) strains of breast cancer with different Dll4 expression levels and eight congenic xenograft strains were studied. Principal component analysis (PCA) was used to visualize and segment tumors, and modified PCA techniques identified and analyzed tumor and normal regions of interest (ROIs). The average NIR intensity for each ROI was calculated from pixel brightness at each time interval, yielding easily interpretable features including the slope of initial ICG uptake, time to peak perfusion, and rate of ICG intensity change after reaching half-maximum intensity. Machine learning algorithms were applied to select discriminative features for classification, and model performance was evaluated with a confusion matrix, receiver operating characteristic curve, and area under the curve. The selected machine learning methods accurately identified host Dll4 expression alterations with sensitivity and specificity above 90%. This may enable stratification of patients for Dll4 targeted therapies. NIR imaging with ICG can noninvasively assess Dll4 expression levels in tumors and aid in effective decision making for cancer therapy.

Indexed as

binary classificationcancerconsomic xenograft modeldynamic enhanced NIR imagingindocyanine greenmachine learningnotch-DLL4time seriestumor detectiontumor microenvironment modifier

Identifiers

PMID36900252
PMCPMC10000786
OpenAlexW4322503361

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read27
table measurements read9
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.