Evidence map›Paper›PMID 36897478›Full record

ArticleGlycoconjugate journal2023

Possible regulation of ganglioside GD3 synthase gene expression with DNA methylation in human glioma cells.

Yurie Yamamoto, Ken Higashimoto, Yuki Ohkawa, Hidenobu Soejima, Kei Kaneko, Yuhsuke Ohmi, Keiko Furukawa, Koichi Furukawa

Abstract read
PubMed Publisher
In one paragraph

Article in Glycoconjugate journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Ganglioside GD2 Contributes to a Stem-Like Phenotype in Intrahepatic Cholangiocarcinoma.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yurie YamamotoDepartment of Biochemistry II, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Ken HigashimotoDepartment of Biomolecular Sciences, Division of Molecular Genetics & Epigenetics, Saga University Faculty of Medicine, Saga, Japan.
Yuki OhkawaDepartment of Biochemistry II, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Hidenobu SoejimaDepartment of Biomolecular Sciences, Division of Molecular Genetics & Epigenetics, Saga University Faculty of Medicine, Saga, Japan.
Kei KanekoDepartment of Biomedical Sciences, Chubu University College of Life and Health Sciences, Kasugai, Japan.
Yuhsuke OhmiDepartment of Clinical Engineering, Chubu University College of Life and Health Sciences, Kasugai, Japan.
Keiko FurukawaDepartment of Biomedical Sciences, Chubu University College of Life and Health Sciences, Kasugai, Japan.
Koichi FurukawaDepartment of Biochemistry II, Nagoya University Graduate School of Medicine, Nagoya, Japan. koichi@isc.chubu.ac.jp.
Chubu University · JPNagoya University · JPSaga University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gangliosides are expressed in nervous systems and some neuroectoderm-derived tumors at high levels and play pivotal roles. However, mechanisms for the regulation of glycosyltransferase genes responsible for the ganglioside synthesis are not well understood. In this study, we analyzed DNA methylation patterns of promoter regions of GD3 synthase (ST8SIA1) as well as mRNA levels and ganglioside expression using human glioma cell lines. Among 5 cell lines examined, 4 lines showed changes in the expression levels of related genes after treatment with 5-aza-dC. LN319 showed up-regulation of St8sia1 and increased b-series gangliosides after 5-aza-dC treatment, and an astrocytoma cell line, AS showed high expression of ST8SIA1 and b-series gangliosides persistently before and after 5-Aza-2'-deoxycytidine treatment. Using these 2 cell lines, DNA methylation patterns of the promoter regions of the gene were analyzed by bisulfite-sequencing. Consequently, 2 regions that were methylated before 5-Aza-2'-deoxycytidine treatment were demethylated in LN319 after the treatment, while those regions were persistently demethylated in AS. These 2 regions corresponded with sites defined as promoter regions by Luciferase assay. Taken together, it was suggested that ST8SIA1 gene is regulated by DNA methylation at the promoter regions, leading to the regulation of tumor phenotypes.

Indexed as

DNA MethylationGliomaAzacitidineCell Line, TumorDecitabineGangliosidesGene ExpressionGene Expression Regulation, NeoplasticHumansPromoter Regions, GeneticSialyltransferasesalpha-N-acetylneuraminate alpha-2,8-sialyltransferaseAzacitidineDecitabineganglioside, GD3GangliosidesSialyltransferasesGangliosideGliomaMethylationPromoterRegulation

Identifiers

PMID36897478
OpenAlexW4323808487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.