Evidence map›Paper›PMID 36897113›Full record

ReviewDisease models & mechanisms2023

Translating non-coding genetic associations into a better understanding of immune-mediated disease.

Christina T Stankey, James C Lee

Open access · goldFull text readReview
In one paragraph

Review in Disease models & mechanisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christina T StankeyGenetic Mechanisms of Disease Laboratory, The Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0001-5710-1716
James C LeeGenetic Mechanisms of Disease Laboratory, The Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0001-5711-9385
The Francis Crick Institute · GB

Funding

Cancer Research UK CC2219Francis Crick InstituteLister Institute of Preventive MedicineMedical Research Council CC2219Wellcome Trust CC2219
6 · The paper itself

Abstract

Genome-wide association studies have identified hundreds of genetic loci that are associated with immune-mediated diseases. Most disease-associated variants are non-coding, and a large proportion of these variants lie within enhancers. As a result, there is a pressing need to understand how common genetic variation might affect enhancer function and thereby contribute to immune-mediated (and other) diseases. In this Review, we first describe statistical and experimental methods to identify causal genetic variants that modulate gene expression, including statistical fine-mapping and massively parallel reporter assays. We then discuss approaches to characterise the mechanisms by which these variants modulate immune function, such as clustered regularly interspaced short palindromic repeats (CRISPR)-based screens. We highlight examples of studies that, by elucidating the effects of disease variants within enhancers, have provided important insights into immune function and uncovered key pathways of disease.

Indexed as

Genetic LociGenome-Wide Association StudyClustered Regularly Interspaced Short Palindromic RepeatsGeneticsGenomicsImmune-mediated diseaseImmunology

Identifiers

PMID36897113
PMCPMC10040244
OpenAlexW4323804394

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read6
measurements read3
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.