Evidence map›Paper›PMID 36894948›Full record

ArticleVirology journal2023

Virome of wild rats (Rattus norvegicus) captured far from pig farms in Jiangsu province of China reveals novel porcine circovirus type 2d (PCV2d) sequences.

Min Zhao, Siwen Bao, Diandian Xu, Jingxian He, Han Zhang, Likai Ji, Shixing Yang, Xiaochun Wang, Quan Shen, Jia Liu and 4 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Min Zhao *Department of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Siwen Bao *Department of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Diandian XuDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Jingxian HeSchool of Medicine, Suzhou University, Suzhou, 215031, Jiangsu, China.
Han ZhangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Likai JiDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Shixing YangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Xiaochun WangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Quan ShenDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China.
Jia LiuQinghai Institute of Endemic Disease Prevention and Control, Xining, 811602, Qinghai, China.
Qing ZhangQinghai Institute of Endemic Disease Prevention and Control, Xining, 811602, Qinghai, China.
Xiao MaQinghai Institute of Endemic Disease Prevention and Control, Xining, 811602, Qinghai, China. maxiao0971@163.com.
Wen ZhangDepartment of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212003, Jiangsu, China. z0216wen@yahoo.com.
Tongling ShanShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, 200241, China. shantongling@shvri.ac.cn.
Jiangsu University · CNQinghai Institute for Endemic Diease Prevention and Control · CNShanghai Veterinary Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPorcine circovirus type 2 (PCV2) has caused great economic losses in the global pig industry. There have been published records of wild rats acting as the reservoirs of PCV2 (only PCV2a and PCV2b), but almost all of which were related to the PCV2-infected swine herds.

resultsIn this study, we carried out the detection, amplification, and characterization of novel PCV2 strains in wild rats that were captured far from pig farms. Nested PCR assay demonstrated that the kidney, heart, lung, liver, pancreas, and large and small intestines of rats were screened positive for PCV2. We subsequently sequenced two full genomes of PCV2 in positive sample pools, designated as js2021-Rt001 and js2021-Rt002. Genome sequence analysis indicated that they had the highest similarity to nucleotide sequences of porcine-origin PCV2 isolates in Vietnam. Phylogenetically, js2021-Rt001 and js2021-Rt002 were a part of the PCV2d genotype cluster, which is a predominant genotype circulating worldwide in recent years. The antibody recognition regions, immunodominant decoy epitope, and heparin sulfate binding motif of the two complete genome sequences coincided with those previously reported.

conclusionsOur research reported the genomic characterization of two novel PCV2 strains (js2021-Rt001 and js2021-Rt002) and provided the first supported evidence that PCV2d could naturally infect wild rats in China. However, whether the newly identified strains have potential for circulating in nature in vertical and horizontal transmission or inter-species jumping between rats and pigs needs further research.

Indexed as

Circoviridae InfectionsCircovirusSwine DiseasesAnimalsChinaFarmsGenotypePhylogenyRatsSwineViromePCV2Phylogenetic analysisWild rat

Identifiers

PMID36894948
PMCPMC9997004
OpenAlexW4323808820

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.