Evidence map›Paper›PMID 36894709›Full record

ArticleNature genetics2023

Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection.

Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna and 18 more

Open access · hybridFull text read
In one paragraph

Article in Nature genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. The SMARCA4-TMEM47 axis plays an essential role in chikungunya virus RNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  8. Article
  9. Review
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  11. Review
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  14. Chromatin remodellers as therapeutic targets.Nature reviews. Drug discovery · 2024
    Review
  15. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 1 country.

Jin Wei *Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-2832-1610
Ajinkya Patil *Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1080-1146
Clayton K CollingsDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.
Mia Madel AlfajaroDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Yu LiangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Wesley L CaiHillman Cancer Center, University of Pittsburgh Medical Center, Pittsburgh, PA, USA.
Madison S StrineDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-8572-1314
Renata B FillerDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Peter C DeWeirdtGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-4707-7940
Ruth E HannaGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Bridget L MenascheDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Arya ÖktenDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7460-7951
Mario A Peña-HernándezDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Jon KleinDepartment of Immunobiology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-3552-7684
Andrew McNamaraDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Romel RosalesDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-5326-4753
Briana L McGovernDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
M Luis RodriguezDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-6551-1827
Kris M WhiteDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-0889-0506
Yiren QinHuffington Center for Cell-based Research in Parkinson's Disease, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
John G DoenchGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-3707-9889
Qin YanDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4077-453X
Akiko IwasakiDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7824-9856
Thomas P ZwakaHuffington Center for Cell-based Research in Parkinson's Disease, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jun QiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1461-3356
Cigall KadochDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. cigall_kadoch@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-4058-5985
Craig B WilenDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA. craig.wilen@yale.edu.ORCID http://orcid.org/0000-0003-2495-9403
Yale University · USIcahn School of Medicine at Mount Sinai · USBroad Institute · USHarvard University · USYale Cancer Center · USHoward Hughes Medical Institute · USUPMC Hillman Cancer Center · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
IMMUNOHEMATOLOGY/TRANSFUSION MEDICINE RESEARCH TRAININGT32HL007974 · NHLBI · YALE UNIVERSITY · PI JEANNE E HENDRICKSON, Diane S Krause · 2001 to 2026
$8.1M
Mechanisms of Nipah virus fusion and entryR01AI109022 · NIAID · WASHINGTON STATE UNIVERSITY · PI AGUILAR-CARRENO, HECTOR · 2014 to 2024
$4.3M
The role of tuft cells in norovirus pathogenesisR01AI148467 · NIAID · YALE UNIVERSITY · PI Craig Brian Wilen · 2020 to 2026
$3.9M
Reversing Oncogenic BAF Complex Structure & Function: New Therapeutic ApproachesDP2CA195762 · NCI · DANA-FARBER CANCER INST · PI KADOCH, CIGALL · 2014 to 2014
$2.6M
Role of virus-receptor interactions in determining norovirus tropism and pathogenesis in vivoK08AI128043 · NIAID · YALE UNIVERSITY · PI WILEN, CRAIG BRIAN · 2017 to 2021
$940k
CRISPR screens for SARS-CoV-2 Host FactorsR21AI157835 · NIAID · BROAD INSTITUTE, INC. · PI DOENCH, JOHN GERARD · 2020 to 2020
$440k
NCATS NIH HHS UL1 TR001863NCI NIH HHS DP2 CA195762NHLBI NIH HHS T32 HL007974NIAID NIH HHS 75N93021C00014NIAID NIH HHS K08 AI128043NIAID NIH HHS R01 AI148467NIAID NIH HHS R21 AI157835NIAID NIH HHS U19 AI135972
6 · The paper itself

Abstract

Identification of host determinants of coronavirus infection informs mechanisms of viral pathogenesis and can provide new drug targets. Here we demonstrate that mammalian SWItch/Sucrose Non-Fermentable (mSWI/SNF) chromatin remodeling complexes, specifically canonical BRG1/BRM-associated factor (cBAF) complexes, promote severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and represent host-directed therapeutic targets. The catalytic activity of SMARCA4 is required for mSWI/SNF-driven chromatin accessibility at the ACE2 locus, ACE2 expression and virus susceptibility. The transcription factors HNF1A/B interact with and recruit mSWI/SNF complexes to ACE2 enhancers, which contain high HNF1A motif density. Notably, small-molecule mSWI/SNF ATPase inhibitors or degraders abrogate angiotensin-converting enzyme 2 (ACE2) expression and confer resistance to SARS-CoV-2 variants and a remdesivir-resistant virus in three cell lines and three primary human cell types, including airway epithelial cells, by up to 5 logs. These data highlight the role of mSWI/SNF complex activities in conferring SARS-CoV-2 susceptibility and identify a potential class of broad-acting antivirals to combat emerging coronaviruses and drug-resistant variants.

Indexed as

COVID-19Angiotensin-Converting Enzyme 2ChromatinDNA HelicasesHumansNuclear ProteinsSARS-CoV-2Transcription FactorsAngiotensin-Converting Enzyme 2ChromatinDNA HelicasesNuclear ProteinsSMARCA4 protein, humanTranscription Factors

Identifiers

PMID36894709
PMCPMC10011139
OpenAlexW4323660315

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read100
identifiers read7
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.