Evidence map›Paper›PMID 36894532›Full record

ArticleNature communications2023

Development of the oral resistome during the first decade of life.

Smitha Sukumar, Fang Wang, Carra A Simpson, Cali E Willet, Tracy Chew, Toby E Hughes, Michelle R Bockmann, Rosemarie Sadsad, F Elizabeth Martin, Henry W Lydecker and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Mapping the oral resistome: a systematic review.Journal of medical microbiology · 2024
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Smitha SukumarFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia. smitha.sukumar@sydney.edu.au.ORCID 0000-0001-8202-3748
Fang WangFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
Carra A SimpsonThe Vatche and Tamar Manoukian Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, US.
Cali E WilletSydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0001-8449-1502
Tracy ChewSydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0001-9529-7705
Toby E HughesFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0001-8668-7744
Michelle R BockmannAdelaide Dental School, University of Adelaide, Adelaide, SA, Australia.
Rosemarie SadsadSydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0003-2488-953X
F Elizabeth MartinFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
Henry W LydeckerSydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.
Gina V BrowneFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
Kylie M DavisAdelaide Dental School, University of Adelaide, Adelaide, SA, Australia.
Minh BuiMelbourne School of Population and Global Health, The University of Melbourne, Melbourne, Australia.ORCID 0000-0002-9099-6870
Elena MartinezFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
Christina J AdlerFaculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia. christina.adler@sydney.edu.au.ORCID 0000-0002-4731-5291
The University of Sydney · AUThe University of Adelaide · AUThe University of Melbourne · AUUniversity of California, Los Angeles · US

Funding

Metagenomics of the Microbiome in Oral Health and DiseaseR01DE019665 · NIDCR · J. CRAIG VENTER INSTITUTE, INC. · PI NELSON, KAREN E. · 2010 to 2014
$3.4M
Reconstructing early life environmental exposures using tooth biomarkers and their influence on the trajectory of the oral microbiome and oral health in childhoodR01DE029838 · NIDCR · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ADLER, CHRISTINA JANE, PETRICK, LAUREN · 2020 to 2024
$3.3M
NIDCR NIH HHS R01 DE019665NIDCR NIH HHS R01 DE029838
6 · The paper itself

Abstract

Antibiotic overuse has promoted the spread of antimicrobial resistance (AMR) with significant health and economic consequences. Genome sequencing reveals the widespread presence of antimicrobial resistance genes (ARGs) in diverse microbial environments. Hence, surveillance of resistance reservoirs, like the rarely explored oral microbiome, is necessary to combat AMR. Here, we characterise the development of the paediatric oral resistome and investigate its role in dental caries in 221 twin children (124 females and 97 males) sampled at three time points over the first decade of life. From 530 oral metagenomes, we identify 309 ARGs, which significantly cluster by age, with host genetic effects detected from infancy onwards. Our results suggest potential mobilisation of ARGs increases with age as the AMR associated mobile genetic element, Tn916 transposase was co-located with more species and ARGs in older children. We find a depletion of ARGs and species in dental caries compared to health. This trend reverses in restored teeth. Here we show the paediatric oral resistome is an inherent and dynamic component of the oral microbiome, with a potential role in transmission of AMR and dysbiosis.

Indexed as

Dental CariesMicrobiotaAnti-Bacterial AgentsChildDrug Resistance, BacterialFemaleGenes, BacterialHumansMaleAnti-Bacterial Agents

Identifiers

PMID36894532
PMCPMC9998430
OpenAlexW4323663838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.