Evidence map›Paper›PMID 36893077›Full record

ArticleChembiochem : a European journal of chemical biology2023

Mapping the Chemical Space of Active-Site Targeted Covalent Ligands for Protein Tyrosine Phosphatases.

Suk Ho Hong, Sarah Y Xi, Andrew C Johns, Lauren C Tang, Allyson Li, Madeleine N Hum, Cassandra A Chartier, Marko Jovanovic, Neel H Shah

Open access · bronzeAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Mapping the SHP2 Allosteric Pocket With Target-Biased Covalent Fragments.Chembiochem : a European journal of chemical biology · 2026
    Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Suk Ho HongDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0000-0002-6024-0685
Sarah Y XiDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0000-0001-7590-3202
Andrew C JohnsDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0000-0002-3197-1390
Lauren C TangDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.ORCID 0000-0001-8786-5418
Allyson LiDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0000-0003-2359-7703
Madeleine N HumDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0009-0004-3350-1677
Cassandra A ChartierDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0009-0004-2474-9937
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.ORCID 0000-0001-9707-3377
Neel H ShahDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.ORCID 0000-0002-1186-0626
Columbia University · US

Funding

Extensive multiplexing of protein nucleic-acid interactions to comprehensively study gene expression regulation from chromatin to mRNA degradationR01HG012216 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GUTTMAN, MITCHELL, JOVANOVIC, MARKO · 2022 to 2025
$3.1M
Defining the programmed proteome rejuvenation underlying gametogenesisR01AG071869 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN, JOVANOVIC, MARKO · 2021 to 2025
$2.9M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
Probing tyrosine phosphatase structure and functionR35GM138014 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHAH, NEEL H · 2020 to 2024
$2.3M
Cryoprobe Upgrade of a 500 MHz NMR SpectrometerS10OD026749 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DECATUR, JOHN D · 2019 to 2019
$376k
NHGRI NIH HHS R01 HG012216NIA NIH HHS R01 AG071869NIGMS NIH HHS R35 GM128802NIGMS NIH HHS R35 GM138014NIH HHS S10 OD026749
6 · The paper itself

Abstract

Protein tyrosine phosphatases (PTPs) are an important class of enzymes that modulate essential cellular processes through protein dephosphorylation and are dysregulated in various disease states. There is demand for new compounds that target the active sites of these enzymes, for use as chemical tools to dissect their biological roles or as leads for the development of new therapeutics. In this study, we explore an array of electrophiles and fragment scaffolds to investigate the required chemical parameters for covalent inhibition of tyrosine phosphatases. Our analysis juxtaposes the intrinsic electrophilicity of these compounds with their potency against several classical PTPs, revealing chemotypes that inhibit tyrosine phosphatases while minimizing excessive, potentially non-specific reactivity. We also assess sequence divergence at key residues in PTPs to explain their differential susceptibility to covalent inhibition. We anticipate that our study will inspire new strategies to develop covalent probes and inhibitors for tyrosine phosphatases.

Indexed as

Protein Tyrosine PhosphatasesTyrosineCatalytic DomainProtein Tyrosine PhosphatasesTyrosine

Identifiers

PMID36893077
PMCPMC10192133
OpenAlexW4323653732

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.