Evidence map›Paper›PMID 36892716›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2023

Impact of in vitro phytohormone treatments on the metabolome of the leafy liverwort Radula complanata (L.) Dumort.

Kaitlyn Blatt-Janmaat, Steffen Neumann, Florian Schmidt, Jörg Ziegler, Yang Qu, Kristian Peters

Open access · hybridAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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  6. Analysis of the response mechanisms ofFrontiers in plant science · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kaitlyn Blatt-JanmaatDepartment of Chemistry, University of New Brunswick, Fredericton, E3B 5A3, NB, Canada. kaitlyn_blatt-janmaat@hotmail.ca.ORCID 0000-0002-0426-0825
Steffen NeumannBioinformatics and Scientific Data, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle (Saale), Germany.ORCID 0000-0002-7899-7192
Florian SchmidtBioinformatics and Scientific Data, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle (Saale), Germany.
Jörg ZieglerMolecular Signal Processing, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle (Saale), Germany.ORCID 0000-0001-6838-1549
Yang QuDepartment of Chemistry, University of New Brunswick, Fredericton, E3B 5A3, NB, Canada.ORCID 0000-0002-0847-7212
Kristian PetersBioinformatics and Scientific Data, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle (Saale), Germany.ORCID 0000-0002-4321-0257
German Centre for Integrative Biodiversity Research · DELeibniz Institute of Plant Biochemistry · DEUniversity of New Brunswick · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionLiverworts are a group of non-vascular plants that possess unique metabolism not found in other plants. Many liverwort metabolites have interesting structural and biochemical characteristics, however the fluctuations of these metabolites in response to stressors is largely unknown.

objectivesTo investigate the metabolic stress-response of the leafy liverwort Radula complanata.

methodsFive phytohormones were applied exogenously to in vitro cultured R. complanata and an untargeted metabolomic analysis was conducted. Compound classification and identification was performed with CANOPUS and SIRIUS while statistical analyses including PCA, ANOVA, and variable selection using BORUTA were conducted to identify metabolic shifts.

resultsIt was found that R. complanata was predominantly composed of carboxylic acids and derivatives, followed by benzene and substituted derivatives, fatty acyls, organooxygen compounds, prenol lipids, and flavonoids. The PCA revealed that samples grouped based on the type of hormone applied, and the variable selection using BORUTA (Random Forest) revealed 71 identified and/or classified features that fluctuated with phytohormone application. The stress-response treatments largely reduced the production of the selected primary metabolites while the growth treatments resulted in increased production of these compounds. 4-(3-Methyl-2-butenyl)-5-phenethylbenzene-1,3-diol was identified as a biomarker for the growth treatments while GDP-hexose was identified as a biomarker for the stress-response treatments.

conclusionExogenous phytohormone application caused clear metabolic shifts in Radula complanata that deviate from the responses of vascular plants. Further identification of the selected metabolite features can reveal metabolic biomarkers unique to liverworts and provide more insight into liverwort stress responses.

Indexed as

HepatophytaMetabolomicsBiomarkersMetabolomePlant Growth RegulatorsBiomarkersPlant Growth RegulatorsCompound classificationLC-MSLiverwortsMetabolite identificationPhytohormonesUntargeted metabolomics

Identifiers

PMID36892716
PMCPMC9998581
OpenAlexW4323652554

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.