Evidence map›Paper›PMID 36891850›Full record

ArticleJournal of synchrotron radiation2023

Development of serial X-ray fluorescence holography for radiation-sensitive protein crystals.

Artoni Kevin R Ang, Yasufumi Umena, Ayana Sato-Tomita, Naoya Shibayama, Naohisa Happo, Riho Marumi, Yuta Yamamoto, Koji Kimura, Naomi Kawamura, Yu Takano and 4 more

Full text read
In one paragraph

Article in Journal of synchrotron radiation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Artoni Kevin R AngDepartment of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan.ORCID 0000-0002-1576-3137
Yasufumi UmenaSynchrotron Radiation Research Center, Nagoya University, Furo, Chikusa, Nagoya 466-8603, Japan.
Ayana Sato-TomitaDivision of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi 329-0498, Japan.
Naoya ShibayamaDivision of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi 329-0498, Japan.ORCID 0000-0002-2208-1126
Naohisa HappoDepartment of Computer and Network Engineering, Graduate School of Information Sciences, Hiroshima City University, Asa-Minami-ku, Hiroshima 731-3194, Japan.ORCID 0000-0003-1888-6762
Riho MarumiDepartment of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan.
Yuta YamamotoDepartment of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan.
Koji KimuraDepartment of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan.
Naomi KawamuraJapan Synchrotron Radiation Research Institute (JASRI), Sayo, Hyôgo 679-5198, Japan.
Yu TakanoGraduate School of Information Sciences, Hiroshima City University, Asa-Minami-ku, Hiroshima 731-3194, Japan.
Tomohiro MatsushitaGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0002-2547-3811
Yuji C SasakiGraduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba 277-8561, Japan.
Jian Ren ShenResearch Institute for Interdisciplinary Science and Graduate School of Natural Science and Technology, Okayama University, Tsushima Naka, Okayama 700-8530, Japan.ORCID 0000-0003-4471-8797
Kouichi HayashiDepartment of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan.

Funding

Japan Society for the Promotion of Science 17H05219Japan Society for the Promotion of Science 20H05878Japan Society for the Promotion of Science 20H05881Japan Society for the Promotion of Science 20H05883Japan Society for the Promotion of Science 20H05884Japan Society for the Promotion of Science 26105005Japan Society for the Promotion of Science 26105006Japan Society for the Promotion of Science JP16KT0058Japan Society for the Promotion of Science JP17H06372
6 · The paper itself

Abstract

X-ray fluorescence holography (XFH) is a powerful atomic resolution technique capable of directly imaging the local atomic structure around atoms of a target element within a material. Although it is theoretically possible to use XFH to study the local structures of metal clusters in large protein crystals, the experiment has proven difficult to perform, especially on radiation-sensitive proteins. Here, the development of serial X-ray fluorescence holography to allow the direct recording of hologram patterns before the onset of radiation damage is reported. By combining a 2D hybrid detector and the serial data collection used in serial protein crystallography, the X-ray fluorescence hologram can be directly recorded in a fraction of the measurement time needed for conventional XFH measurements. This approach was demonstrated by obtaining the Mn Kα hologram pattern from the protein crystal Photosystem II without any X-ray-induced reduction of the Mn clusters. Furthermore, a method to interpret the fluorescence patterns as real-space projections of the atoms surrounding the Mn emitters has been developed, where the surrounding atoms produce large dark dips along the emitter-scatterer bond directions. This new technique paves the way for future experiments on protein crystals that aim to clarify the local atomic structures of their functional metal clusters, and for other related XFH experiments such as valence-selective XFH or time-resolved XFH.

Indexed as

HolographyCrystallography, X-RayFluorescenceProteinsRadiographyX-RaysProteinsatomic structuresprotein structuresX-ray fluorescence holography

Identifiers

PMID36891850
PMCPMC10000799

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.