Evidence map›Paper›PMID 36890966›Full record

ArticleFrontiers in computational neuroscience2023

Improved space breakdown method - A robust clustering technique for spike sorting.

Eugen-Richard Ardelean, Ana-Maria Ichim, Mihaela Dînşoreanu, Raul Cristian Mureşan

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Article in Frontiers in computational neuroscience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

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2 citing papers in PubMed.

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5 · Who and what money

Authors and funding

4 authors.

Eugen-Richard ArdeleanDepartment of Experimental and Theoretical Neuroscience, Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania.
Ana-Maria IchimDepartment of Experimental and Theoretical Neuroscience, Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania.
Mihaela DînşoreanuDepartment of Computer Science, Technical University of Cluj-Napoca, Cluj-Napoca, Romania.
Raul Cristian MureşanDepartment of Experimental and Theoretical Neuroscience, Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Space Breakdown Method (SBM) is a clustering algorithm that was developed specifically for low-dimensional neuronal spike sorting. Cluster overlap and imbalance are common characteristics of neuronal data that produce difficulties for clustering methods. SBM is able to identify overlapping clusters through its design of cluster centre identification and the expansion of these centres. SBM's approach is to divide the distribution of values of each feature into chunks of equal size. In each of these chunks, the number of points is counted and based on this number the centres of clusters are found and expanded. SBM has been shown to be a contender for other well-known clustering algorithms especially for the particular case of two dimensions while being too computationally expensive for high-dimensional data. Here, we present two main improvements to the original algorithm in order to increase its ability to deal with high-dimensional data while preserving its performance: the initial array structure was substituted with a graph structure and the number of partitions has been made feature-dependent, denominating this improved version as the Improved Space Breakdown Method (ISBM). In addition, we propose a clustering validation metric that does not punish overclustering and such obtains more suitable evaluations of clustering for spike sorting. Extracellular data recorded from the brain is unlabelled, therefore we have chosen simulated neural data, to which we have the ground truth, to evaluate more accurately the performance. Evaluations conducted on synthetic data indicate that the proposed improvements reduce the space and time complexity of the original algorithm, while simultaneously leading to an increased performance on neural data when compared with other state-of-the-art algorithms. Code available at: https://github.com/ArdeleanRichard/Space-Breakdown-Method.

Indexed as

clusteringdensitydifferent densitygridmachine learningoverlapping clustersspike sorting

Identifiers

PMID36890966
PMCPMC9986479

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.