Evidence map›Paper›PMID 36890276›Full record

ArticleScientific reports2023

Uracil-DNA glycosylase efficiency is modulated by substrate rigidity.

Paul B Orndorff, Souvik Poddar, Aerial M Owens, Nikita Kumari, Bryan T Ugaz, Samrat Amin, Wade D Van Horn, Arjan van der Vaart, Marcia Levitus

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Paul B Orndorff *Department of Chemistry, University of South Florida, Tampa, FL, 33620, USA.
Souvik Poddar *School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Aerial M Owens *School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Nikita KumariSchool of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Bryan T UgazSchool of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Samrat AminMagnetic Resonance Research Center, Arizona State University, Tempe, AZ, 85287, USA.
Wade D Van HornSchool of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA. wade.van.horn@asu.edu.
Arjan van der VaartDepartment of Chemistry, University of South Florida, Tampa, FL, 33620, USA. avandervaart@usf.edu.
Marcia LevitusSchool of Molecular Sciences, Arizona State University, Tempe, AZ, 85287, USA. marcia.levitus@asu.edu.
Arizona State University · USUniversity of South Florida · USResonance Research (United States) · US

Funding

Molecular Mechanisms and Regulation Networks of TRPM8 - Renewal - 1R35GM141933 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI Wade D. Van Horn · 2021 to 2026
$2.5M
NIGMS NIH HHS R35 GM141933NIH HHS R35GM141933
6 · The paper itself

Abstract

Uracil DNA-glycosylase (UNG) is a DNA repair enzyme that removes the highly mutagenic uracil lesion from DNA using a base flipping mechanism. Although this enzyme has evolved to remove uracil from diverse sequence contexts, UNG excision efficiency depends on DNA sequence. To provide the molecular basis for rationalizing UNG substrate preferences, we used time-resolved fluorescence spectroscopy, NMR imino proton exchange measurements, and molecular dynamics simulations to measure UNG specificity constants (k

Indexed as

Uracil-DNA GlycosidaseDNADNA RepairHumansMutagenesisUracilDNAUracilUracil-DNA Glycosidase

Identifiers

PMID36890276
PMCPMC9995336
OpenAlexW4323542862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.