Evidence map›Paper›PMID 36888659›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Bivalent molecular mimicry by ADP protects metal redox state and promotes coenzyme B

Harsha Gouda, Romila Mascarenhas, Markus Ruetz, Madeline Yaw, Ruma Banerjee

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. An unusual Co-S bond links BProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Cobalt-Sulfur Coordination Chemistry Drives BJournal of the American Chemical Society · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Harsha GoudaDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Romila MascarenhasDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Markus RuetzDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.ORCID 0000-0001-9540-7310
Madeline YawDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.
Ruma BanerjeeDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109.ORCID 0000-0001-8332-3275
University of Michigan · US

Funding

REACTION MECHANISMS OF MAMMALIAN B12-DEPENDENT ENZYMESR01DK045776 · NIDDK · UNIVERSITY OF NEBRASKA LINCOLN · PI RUMA V BANERJEE · 1998 to 2026
$9.7M
Vitamin B12 trafficking and selectivity in gut bacteriaR00GM143482 · NIGMS · UNIVERSITY OF OREGON · PI Romila Nina Mascarenhas · 2024 to 2026
$747k
Vitamin B12 trafficking and selectivity in gut bacteriaK99GM143482 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MASCARENHAS, ROMILA NINA · 2022 to 2023
$220k
NIDDK NIH HHS R01 DK045776NIGMS NIH HHS K99 GM143482NIGMS NIH HHS R00 GM143482
6 · The paper itself

Abstract

Control over transition metal redox state is essential for metalloprotein function and can be achieved via coordination chemistry and/or sequestration from bulk solvent. Human methylmalonyl-Coenzyme A (CoA) mutase (MCM) catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA using 5'-deoxyadenosylcobalamin (AdoCbl) as a metallocofactor. During catalysis, the occasional escape of the 5'-deoxyadenosine (dAdo) moiety leaves the cob(II)alamin intermediate stranded and prone to hyperoxidation to hydroxocobalamin, which is recalcitrant to repair. In this study, we have identified the use of bivalent molecular mimicry by ADP, coopting the 5'-deoxyadenosine and diphosphate moieties in the cofactor and substrate, respectively, to protect against cob(II)alamin overoxidation on MCM. Crystallographic and electron paramagnetic resonance (EPR) data reveal that ADP exerts control over the metal oxidation state by inducing a conformational change that seals off solvent access, rather than by switching five-coordinate cob(II)alamin to the more air stable four-coordinate state. Subsequent binding of methylmalonyl-CoA (or CoA) promotes cob(II)alamin off-loading from MCM to adenosyltransferase for repair. This study identifies an unconventional strategy for controlling metal redox state by an abundant metabolite to plug active site access, which is key to preserving and recycling a rare, but essential, metal cofactor.

Indexed as

Molecular MimicryVitamin B 12Adenosine DiphosphateCobamidesHumansMethylmalonyl-CoA MutaseOxidation-ReductionPhosphothreonine7-mercaptoheptanoylthreonine phosphateAdenosine DiphosphatecobamamideCobamidesMethylmalonyl-CoA MutasePhosphothreonineVitamin B 12cobalamincofactorcrystal structuremolecular mimicryredox

Identifiers

PMID36888659
PMCPMC10243129
OpenAlexW4323530870

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.