Evidence map›Paper›PMID 36880209›Full record

ArticleClinical and molecular hepatology2023

Next-generation sequencing analysis of hepatitis C virus resistance-associated substitutions in direct-acting antiviral failure in South Korea.

Kyung-Ah Kim, Sejoon Lee, Hye Jung Park, Eun Sun Jang, Youn Jae Lee, Sung Bum Cho, Young Suk Kim, In Hee Kim, Byung Seok Lee, Woo Jin Chung and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Clinical and molecular hepatology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 1 country.

Kyung-Ah KimDepartment of Internal Medicine, Inje University Ilsan Paik Hospital, Goyang, Korea.
Sejoon LeeDepartment of Precision Medicine Center/Department of Pathology and Translational Medicine, Seoul National University Bundang Hospital, Seongnam, Korea.
Hye Jung ParkDepartment of Internal Medicine, Institute of Gastroenterology, Yonsei University College of Medicine, Seoul, Korea.
Eun Sun JangDepartment of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Korea.
Youn Jae LeeDepartment of Internal Medicine, Inje University Busan Paik Hospital, Busan, Korea.
Sung Bum ChoDepartment of Internal Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Young Suk KimDepartment of Internal Medicine, Soonchunhyang University Bucheon Hospital, Bucheon, Korea.
In Hee KimDepartment of Internal Medicine, Jeonbuk National University Hospital, Jeonju, Korea.
Byung Seok LeeDepartment of Internal Medicine, Chungnam National University Hospital, Daejoen, Korea.
Woo Jin ChungDepartment of Internal Medicine, Keimyung University School of Medicine, Daegu, Korea.
Sang Hoon AhnDepartment of Internal Medicine, Institute of Gastroenterology, Yonsei University College of Medicine, Seoul, Korea.
Seungtaek KimZoonotic Virus Laboratory, Institut Pasteur Korea, Seongnam, Korea.
Sook Hyang JeongDepartment of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Korea.
Seoul National University Bundang Hospital · KRYonsei University · KRChonnam National University Hwasun Hospital · KRChungnam National University Hospital · KRInje University Busan Paik Hospital · KRInje University Ilsan Paik Hospital · KRInstitut Pasteur Korea · KRJeonbuk National University Hospital · KRKeimyung University · KRSoonchunhyang University · KR

Funding

Korea Disease Control and Prevention AgencyNational Institute of Infectious Disease 2020-E5104-02National Institute of Infectious Disease 2020-E5105-02
6 · The paper itself

Abstract

BACKGROUND/

aimsWe used next-generation sequencing (NGS) to analyze resistance-associated substitutions (RASs) and retreatment outcomes in patients with chronic hepatitis C virus (HCV) infection who failed direct-acting antiviral agent (DAA) treatment in South Korea.

methodsUsing prospectively collected data from the Korean HCV cohort study, we recruited 36 patients who failed DAA treatment in 10 centers between 2007 and 2020; 29 blood samples were available from 24 patients. RASs were analyzed using NGS.

resultsRASs were analyzed for 13 patients with genotype 1b, 10 with genotype 2, and one with genotype 3a. The unsuccessful DAA regimens were daclatasvir+asunaprevir (n=11), sofosbuvir+ribavirin (n=9), ledipasvir/sofosbuvir (n=3), and glecaprevir/pibrentasvir (n=1). In the patients with genotype 1b, NS3, NS5A, and NS5B RASs were detected in eight, seven, and seven of 10 patients at baseline and in four, six, and two of six patients after DAA failure, respectively. Among the 10 patients with genotype 2, the only baseline RAS was NS3 Y56F, which was detected in one patient. NS5A F28C was detected after DAA failure in a patient with genotype 2 infection who was erroneously treated with daclatasvir+asunaprevir. After retreatment, 16 patients had a 100% sustained virological response rate.

conclusionNS3 and NS5A RASs were commonly present at baseline, and there was an increasing trend of NS5A RASs after failed DAA treatment in genotype 1b. However, RASs were rarely present in patients with genotype 2 who were treated with sofosbuvir+ribavirin. Despite baseline or treatment-emergent RASs, retreatment with pan-genotypic DAA was highly successful in Korea, so we encourage active retreatment after unsuccessful DAA treatment.

Indexed as

Hepatitis CHepatitis C, ChronicAntiviral AgentsCarbamatesCohort StudiesDrug Resistance, ViralDrug Therapy, CombinationGenotypeHepacivirusHigh-Throughput Nucleotide SequencingHumansImidazolesIsoquinolinesPyrrolidinesRibavirinSofosbuvirAntiviral AgentsasunaprevirCarbamatesdaclatasvirImidazolesIsoquinolinesPyrrolidinesRibavirinSofosbuvirSulfonamidesValineViral Nonstructural ProteinsDrug resistance, viralGenotypeHepatitis C virusNext-generation sequencing

Identifiers

PMID36880209
PMCPMC10121280
OpenAlexW4323347256

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.