ArticleNAR genomics and bioinformatics2023
TIS Transformer: remapping the human proteome using deep learning.
Article in NAR genomics and bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The trial behind it
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Who cites it
18 citing papers in PubMed, 22 citations in OpenAlex.
- MetaTIS: a tool to predict cognate and near-cognate translation initiation sites in human.NAR genomics and bioinformatics · 2026Article
- Alternative Translation Initiation in PRKN Delays the Onset of Parkinson's Disease and Offers a Therapeutic Target.Annals of neurology · 2026Article
- Microproteins in Human Physiology and Pathology.Biochemistry · 2026Review
- An enhanced transformer model for detecting 1p36 deletion syndrome.Molecular genetics and genomics : MGG · 2026Article
- An expanded reference catalog of translated open reading frames for biomedical research.Nucleic acids research · 2026Article
- NetStart 2.0: prediction of eukaryotic translation initiation sites using a protein language model.BMC bioinformatics · 2025Article
- Genomic language models (gLMs) decode bacterial genomes for improved gene prediction and translation initiation site identification.Briefings in bioinformatics · 2025Article
- A review on the applications of Transformer-based language models for nucleotide sequence analysis.Computational and structural biotechnology journal · 2025Review
- ShortStop: a machine learning framework for microprotein discovery.BMC methods · 2025Article
- Characterization of shared neoantigens landscape in Mismatch Repair Deficient Endometrial Cancer.NPJ precision oncology · 2024Article
- Deep learning to decode sites of RNA translation in normal and cancerous tissues.bioRxiv : the preprint server for biology · 2024Article
- Untranslated regions (UTRs) are a potential novel source of neoantigens for personalised immunotherapy.Frontiers in immunology · 2024Article
- From intuition to AI: evolution of small molecule representations in drug discovery.Briefings in bioinformatics · 2023Article
- What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?Molecular & cellular proteomics : MCP · 2023Article
- Shining a light on the dark proteome: Non-canonical open reading frames and their encoded miniproteins as a new frontier in cancer biology.Protein science : a publication of the Protein Society · 2023Review
- What can Ribo-seq and proteomics tell us about the non-canonical proteome?bioRxiv : the preprint server for biology · 2023Article
- Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.Molecular cell · 2023Article
- Discovering microproteins: making the most of ribosome profiling data.RNA biology · 2023Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The correct mapping of the proteome is an important step towards advancing our understanding of biological systems and cellular mechanisms. Methods that provide better mappings can fuel important processes such as drug discovery and disease understanding. Currently, true determination of translation initiation sites is primarily achieved by
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.