Evidence map›Paper›PMID 36878014›Full record

ArticleEmerging infectious diseases2023

SARS-CoV-2 Omicron Replacement of Delta as Predominant Variant, Puerto Rico.

Gilberto A Santiago, Hannah R Volkman, Betzabel Flores, Glenda L González, Keyla N Charriez, Limari Cora Huertas, Steven M Van Belleghem, Vanessa Rivera-Amill, Chelsea Major, Candimar Colon and 9 more

Full text read
In one paragraph

Article in Emerging infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Wastewater Surveillance of SARS-CoV-2 in Zambia: An Early Warning Tool.International journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Gilberto A Santiago
Hannah R Volkman
Betzabel Flores
Glenda L González
Keyla N Charriez
Limari Cora Huertas
Steven M Van Belleghem
Vanessa Rivera-Amill
Chelsea Major
Candimar Colon
Rafael Tosado
Laura E Adams
Melissa Marzán
Lorena Hernández
Iris Cardona
Eduardo O'Neill
Gabriela Paz-Bailey
Riccardo Papa
Jorge L Muñoz-Jordan

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Jose R. Rodriguez-Medina · 2012 to 2026
$52.9M
The Role of Midbrain to Prelimbic Cortex Glutamatergic projections in Stress-induced Drug SeekingU54MD007579 · NIMHD · PONCE SCHOOL OF MEDICINE · PI Emmanuel Antonio Cruz, Kenira J Thompson · 2019 to 2026
$35.9M
Tracking and Evaluation CoreU54GM133807 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI PORTER, JAMES T. · 2020 to 2024
$17.7M
ACL HHS U01CK000580NCEZID CDC HHS U01 CK000580NIGMS NIH HHS P20 GM103475NIGMS NIH HHS U54 GM133807NIMHD NIH HHS U54 MD007579
6 · The paper itself

Abstract

We reconstructed the SARS-CoV-2 epidemic caused by Omicron variant in Puerto Rico by sampling genomes collected during October 2021-May 2022. Our study revealed that Omicron BA.1 emerged and replaced Delta as the predominant variant in December 2021. Increased transmission rates and a dynamic landscape of Omicron sublineage infections followed.

Indexed as

COVID-19EpidemicsHumansPuerto RicoSARS-CoV-2coronavirus diseaseCOVID-19Deltagenomic surveillanceNGSOmicronPuerto Ricorespiratory infectionsSARS-CoV-2severe acute respiratory syndrome coronavirus 2viruseszoonoses

Identifiers

PMID36878014
PMCPMC10045710

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read3
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.