Evidence map›Paper›PMID 36877249›Full record

ArticleApplied microbiology and biotechnology2023

Crystal structure and identification of amino acid residues for catalysis and binding of GH3 AnBX β-xylosidase from Aspergillus niger.

Wilaiwan Kaenying, Khuanjarat Choengpanya, Takayoshi Tagami, Pakorn Wattana-Amorn, Weeranuch Lang, Masayuki Okuyama, Yaw-Kuen Li, Atsuo Kimura, Prachumporn T Kongsaeree

Abstract read
PubMed Publisher
In one paragraph

Article in Applied microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Wilaiwan KaenyingDepartment of Biochemistry, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand.ORCID http://orcid.org/0000-0002-1651-233X
Khuanjarat ChoengpanyaInterdisciplinary Graduate Program in Genetic Engineering, Faculty of Graduate School, Kasetsart University, Bangkok, 10900, Thailand.ORCID http://orcid.org/0000-0002-3183-8928
Takayoshi TagamiResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.ORCID http://orcid.org/0000-0002-4004-1558
Pakorn Wattana-AmornDepartment of Chemistry, Special Research Unit for Advanced Magnetic Resonance and Center of Excellence for Innovation in Chemistry, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand.ORCID http://orcid.org/0000-0002-4780-7122
Weeranuch LangResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.ORCID http://orcid.org/0000-0001-5515-665X
Masayuki OkuyamaResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.ORCID http://orcid.org/0000-0001-7013-6032
Yaw-Kuen LiDepartment of Applied Chemistry, College of Science, National Yang Ming Chiao Tung University, Hsinchu, 300, Taiwan.ORCID http://orcid.org/0000-0002-6097-7484
Atsuo KimuraResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.ORCID http://orcid.org/0000-0002-9615-4455
Prachumporn T KongsaereeDepartment of Biochemistry, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand. fscippt@ku.ac.th.ORCID http://orcid.org/0000-0003-0273-2638
Hokkaido University · JPKasetsart University · THMaejo University · THNational Yang Ming Chiao Tung University · TW

Funding

National Research Council of Thailand and Kasetsart University NRCT5-RSA63002-09
6 · The paper itself

Abstract

β-Xylosidases catalyze the hydrolysis of xylooligosaccharides to xylose in the final step of hemicellulose degradation. AnBX, which is a GH3 β-xylosidase from Aspergillus niger, has a high catalytic efficiency toward xyloside substrates. In this study, we report the three-dimensional structure and the identification of catalytic and substrate binding residues of AnBX by performing site-directed mutagenesis, kinetic analysis, and NMR spectroscopy-associated analysis of the azide rescue reaction. The structure of the E88A mutant of AnBX, determined at 2.5-Å resolution, contains two molecules in the asymmetric unit, each of which is composed of three domains, namely an N-terminal (β/α)

Indexed as

Aspergillus nigerXylosidasesAmino AcidsCatalysisCatalytic DomainDisulfidesGlucosidesGlycoside HydrolasesKineticsSubstrate SpecificityAmino AcidsDisulfidesexo-1,4-beta-D-xylosidaseGlucosidesGlycoside HydrolasesXylosidasesAcid/Base catalystCrystal structureGlycone specificityGlycoside hydrolase family 3β-Xylosidase

Identifiers

PMID36877249
OpenAlexW4323294548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.