Evidence map›Paper›PMID 36876434›Full record

ArticleActa crystallographica. Section D, Structural biology2023

Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.

Maruša Prolič-Kalinšek, Alexander N Volkov, San Hadži, Jeroen Van Dyck, Indra Bervoets, Daniel Charlier, Remy Loris

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Xplor-NIH: Better parameters and protocols for NMR protein structure determination.Protein science : a publication of the Protein Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Maruša Prolič-KalinšekStructural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussel, Belgium.ORCID 0000-0003-4175-1858
Alexander N VolkovStructural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussel, Belgium.ORCID 0000-0002-0103-059X
San HadžiDepartment of Physical Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia.
Jeroen Van DyckDepartment of Chemistry, Universiteit Antwerpen, Groenenborgerlaan 171, 2020 Antwerpen, Belgium.ORCID 0000-0003-2233-0687
Indra BervoetsResearch Group of Microbiology, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussel, Belgium.ORCID 0000-0002-1402-7517
Daniel CharlierResearch Group of Microbiology, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussel, Belgium.ORCID 0000-0002-6844-376X
Remy LorisStructural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussel, Belgium.ORCID 0000-0002-8862-3338
Vrije Universiteit Brussel · BEUniversity of Antwerp · BEUniversity of Ljubljana · SI

Funding

Fonds Wetenschappelijk Onderzoek G.0033.20NFonds Wetenschappelijk Onderzoek G.0226.17NJavna Agencija za Raziskovalno Dejavnost RS P1-0201
6 · The paper itself

Abstract

YdaT is a functional equivalent of the CII repressor in certain lambdoid phages and prophages. YdaT from the cryptic prophage CP-933P in the genome of Escherichia coli O157:H7 is functional as a DNA-binding protein and recognizes a 5'-TTGATTN

Indexed as

Escherichia coli O157ProphagesDNADNA-Binding ProteinsProtein DomainsDNADNA-Binding ProteinsCII repressorsDNA bindingtoxin–antitoxintranscription regulationYdaT

Identifiers

PMID36876434
PMCPMC9986795
OpenAlexW4322485573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.