Evidence map›Paper›PMID 36876139›Full record

ArticleiScience2023

Comprehensive characterization of the embryonic factor LEUTX.

Lisa Gawriyski, Eeva-Mari Jouhilahti, Masahito Yoshihara, Liangru Fei, Jere Weltner, Tomi T Airenne, Ras Trokovic, Shruti Bhagat, Mari H Tervaniemi, Yasuhiro Murakawa and 10 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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  11. Molecular and therapeutic advancements in Capicua (Frontiers in cell and developmental biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 5 countries.

Lisa GawriyskiStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Eeva-Mari JouhilahtiStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Masahito YoshiharaDepartment of Biosciences and Nutrition, Karolinska Institutet, 14183 Huddinge, Sweden.
Liangru FeiApplied Tumor Genomics Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, 00290 Helsinki, Finland.
Jere WeltnerStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Tomi T AirenneStructural Bioinformatics Laboratory and InFLAMES Research Flagship Center, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
Ras TrokovicStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Shruti BhagatDepartment of Biosciences and Nutrition, Karolinska Institutet, 14183 Huddinge, Sweden.
Mari H TervaniemiStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Yasuhiro MurakawaRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Kari SalokasInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.
Xiaonan LiuInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.
Sini MiettinenInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.
Thomas R BürglinDepartment of Biomedicine, University of Basel, Basel, Switzerland.
Biswajyoti SahuApplied Tumor Genomics Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, 00290 Helsinki, Finland.
Timo OtonkoskiStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Mark S JohnsonStructural Bioinformatics Laboratory and InFLAMES Research Flagship Center, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
Shintaro KatayamaStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
Markku VarjosaloInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.
Juha KereStem Cells and Metabolism Research Program, University of Helsinki, 00290 Helsinki, Finland.
University of Helsinki · FIÅbo Akademi University · FIKarolinska Institutet · SEKarolinska University Hospital · SEKyoto University · JPUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The paired-like homeobox transcription factor LEUTX is expressed in human preimplantation embryos between the 4- and 8-cell stages, and then silenced in somatic tissues. To characterize the function of LEUTX, we performed a multiomic characterization of LEUTX using two proteomics methods and three genome-wide sequencing approaches. Our results show that LEUTX stably interacts with the EP300 and CBP histone acetyltransferases through its 9 amino acid transactivation domain (9aaTAD), as mutation of this domain abolishes the interactions. LEUTX targets genomic cis-regulatory sequences that overlap with repetitive elements, and through these elements it is suggested to regulate the expression of its downstream genes. We find LEUTX to be a transcriptional activator, upregulating several genes linked to preimplantation development as well as 8-cell-like markers, such as DPPA3 and ZNF280A. Our results support a role for LEUTX in preimplantation development as an enhancer binding protein and as a potent transcriptional activator.

Indexed as

Molecular biologyOmicsReproductive medicine

Identifiers

PMID36876139
PMCPMC9978639
OpenAlexW4319787039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.