Evidence map›Paper›PMID 36876101›Full record

ArticleFrontiers in microbiology2023

The genetic diversity, replication, and transmission of 2009 pandemic H1N1 viruses in China.

Hailiang Sun, Yongcui Wang, Hanlin Liu, Zifeng Pang, Xinxin Cui, Rui Zhao, Yanwei Liu, Xiaoyun Qu, Mian Huang, Changwen Ke and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Hailiang SunCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Yongcui WangThe Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.
Hanlin LiuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Zifeng PangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Xinxin CuiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Rui ZhaoCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Yanwei LiuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Xiaoyun QuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Mian HuangGuangzhou Zoo, The People's Government of Guangzhou Municipality, Guangzhou, China.
Changwen KeGuangdong Provincial Center for Disease Control and Prevention, The People's Government of Guangzhou Municipality, Guangzhou, China.
Ming LiaoCollege of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
South China Agricultural University · CNChinese Academy of Sciences · CNGuangzhou Center for Disease Control and Prevention · CNPeople's Government of Guangzhou Municipality · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The 2009 pandemic H1N1 influenza A virus (pdm09) continue to evolve, and few studies have systemically analyzed the evolution, replication, and transmission of pmd09 viruses in China. Methods: To better understand the evolution and pathogenicity of pdm09 viruses, we systematically analyzed viruses that were confirmed in 2009-2020 in China and characterized their replication and transmission ability. We extensively analyzed the evolution characteristics of pdm/09 in China over the past decades. The replication ability of 6B.1 and 6B.2 lineages on Madin-Darby canine kidney (MDCK) and human lung adenocarcinoma epithelial (A549) cells and their pathogenicity and transmission in guinea pigs were also compared. Results: In total, 3,038 pdm09 viruses belonged to clade 6B.1 (62% of all pdm09 viruses) and clade 6B.2 (4%). Clade 6B.1 pdm09 viruses are the predominant clade, with proportions of 54.1%, 78.9%, 57.2%, 58.6%, 61.7%, 76.3%, and 66.6% in the North, Northeast, East, Central, South, Southwest, and Northeast regions in China, respectively. The isolation proportion of clade 6B.1 pdm/09 viruses was 57.1%, 74.3%, 96.1%, 98.2%, 86.7%, and 78.5% in 2015-2020, respectively. A clear differentiation time point appeared in 2015 before which the evolution trend of pdm09 viruses in China was similar to that in North America but then showed a different trend after that point. To characterize pdm09 viruses in China after 2015, we further analyzed 33 pdm09 viruses isolated in Guangdong in 2016-2017, among which A/ Guangdong/33/2016 and A/Guangdong/184/2016 (184/2016) belonged to clade 6B.2, and the other 31 strains belonged to clade 6B.1. A/Guangdong/887/2017 (887/2017) and A/Guangdong/752/2017 (752/2017) (clade 6B.1), 184/2016 (clade 6B.2) and A/California/04/2009 (CA04) replicated efficiently in MDCK cells and A549 cells, as well as the turbinates of guinea pigs. 184/2016 and CA04 could transmit among guinea pigs through physical contact. Conclusion: Our findings provide novel insights into the evolution, pathogenicity, and transmission of pdm09 virus. The results show that enhancing surveillance of pdm09 viruses and timely evaluation of their virulence are essential.

Indexed as

haplotypes analysisinfluenzaphylogenetic analysisreplicationtransmission

Identifiers

PMID36876101
PMCPMC9982095
OpenAlexW4321248370

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.