Evidence map›Paper›PMID 36875534›Full record

ArticleFrontiers in microbiology2022

Molecular acclimation of

Charly Favreau, Alicia Tribondeau, Marie Marugan, François Guyot, Beatrice Alpha-Bazin, Arul Marie, Remy Puppo, Thierry Dufour, Arnaud Huguet, Séverine Zirah and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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  6. Extremophiles in a changing world.Extremophiles : life under extreme conditions · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Charly FavreauUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
Alicia TribondeauUnité Physiologie Moléculaire et Adaptation (PhyMA), MNHN, CNRS, Paris, France.
Marie MaruganUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
François GuyotInstitut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, Sorbonne Université, CNRS, IRD, Paris, France.
Beatrice Alpha-BazinDépartement Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE, SPI, Bagnols-sur-Cèze, France.
Arul MarieUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
Remy PuppoUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
Thierry DufourLaboratoire de Physique des Plasma (LPP), Sorbonne Université, CNRS, École Polytechnique, Université Paris-Sud, Observatoire de Paris, Paris, France.
Arnaud HuguetUnité Milieux Environnementaux Transferts et Interactions dans les hydrosystèmes et les Sols (METIS), Sorbonne Université, CNRS, EPHE, PSL, Paris, France.
Séverine ZirahUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
Adrienne KishUnité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d'Histoire Naturelle (MNHN), CNRS, Paris, France.
Centre National de la Recherche Scientifique · FRMolécules de Communication et Adaptation des Micro-organismes · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRÉcole Polytechnique · FRSorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halophilic microorganisms have long been known to survive within the brine inclusions of salt crystals, as evidenced by the change in color for salt crystals containing pigmented halophiles. However, the molecular mechanisms allowing this survival has remained an open question for decades. While protocols for the surface sterilization of halite (NaCl) have enabled isolation of cells and DNA from within halite brine inclusions, "-omics" based approaches have faced two main technical challenges: (1) removal of all contaminating organic biomolecules (including proteins) from halite surfaces, and (2) performing selective biomolecule extractions directly from cells contained within halite brine inclusions with sufficient speed to avoid modifications in gene expression during extraction. In this study, we tested different methods to resolve these two technical challenges. Following this method development, we then applied the optimized methods to perform the first examination of the early acclimation of a model haloarchaeon (

Indexed as

halite (NaCl)HalobacteriumhalophileLC-MSproteomics

Identifiers

PMID36875534
PMCPMC9976938
OpenAlexW4318066318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.