Evidence map›Paper›PMID 36871706›Full record

ArticleThe Science of the total environment2023

Occurrence and prevalence of antimicrobial resistance in urban karst groundwater systems based on targeted resistome analysis.

Rachel A Kaiser, Jason S Polk, Tania Datta, Scott P Keely, Nichole E Brinkman, Rohan R Parekh, Getahun E Agga

Abstract read
In one paragraph

Article in The Science of the total environment, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rachel A KaiserSchool of Environmental Studies, College of Interdisciplinary Studies, Tennessee Technological University, 1 William L Jones Drive, Cookeville, TN 38505, United States. Electronic address: rakaiser42@tntech.edu.
Jason S PolkEarth, Environmental, and Atmospheric Sciences Department, Ogden College of Science and Engineering, 1906 College Heights Blvd., Bowling Green, KY 42101, United States.
Tania DattaDepartment of Civil and Environmental Engineering, College of Engineering, Tennessee Technological University, 1 William L Jones Drive, Cookeville, TN 38505, United States.
Scott P KeelyUnited States Environmental Protection Agency, 26 Martin Luther King Drive West, Cincinnati, OH 45220, United States.
Nichole E BrinkmanUnited States Environmental Protection Agency, 26 Martin Luther King Drive West, Cincinnati, OH 45220, United States.
Rohan R ParekhFood Animal Environmental Systems Research Unit, Agricultural Research Service, United States Department of Agriculture, 2413 Nashville Road B5, Bowling Green, KY 42101, United States.
Getahun E AggaFood Animal Environmental Systems Research Unit, Agricultural Research Service, United States Department of Agriculture, 2413 Nashville Road B5, Bowling Green, KY 42101, United States.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Antimicrobial resistance (AMR) is a global crisis threatening human, animal, and environmental health. The natural environment, specifically water resources, has been recognized as a reservoir and dissemination pathway for AMR; however, urban karst aquifer systems have been overlooked. This is a concern as these aquifer systems provide drinking water to about 10 % of the global population; yet, the urban influence on the resistome in these vulnerable aquifers is sparingly explored. This study used high-throughput qPCR to determine the occurrence and relative abundance of antimicrobial resistant genes (ARG) in a developing urban karst groundwater system in Bowling Green, KY. Ten sites throughout the city were sampled weekly and analyzed for 85 ARGs, as well as seven microbial source tracking (MST) genes for human and animal sources, providing a spatiotemporal understanding of the resistome in urban karst groundwater. To further understand ARGs in this environment, potential drivers (landuse, karst feature type, season, source of fecal pollution) were considered in relation to the resistome relative abundance. The MST markers highlighted a prominent human influence to the resistome in this karst setting. The concentration of targeted genes varied between the sample weeks, but all targeted ARGs were prevalent throughout the aquifer regardless of karst feature type or season, with high concentrations captured for sulfonamide (sul1), quaternary ammonium compound (qacE), and aminoglycoside (strB) antimicrobial classes. Higher prevalence and relative abundance were detected during the summer and fall seasons, as well as at the spring features. Linear discriminant analysis suggested that karst feature type had higher influence on ARGs in the aquifer compared to season and the source of fecal pollution had the least influence. These findings can contribute to the development of effective management and mitigation strategies for AMR.

Indexed as

Drinking WaterGroundwaterAnimalsAnti-Bacterial AgentsDrug Resistance, BacterialGenes, BacterialHumansPrevalenceAnti-Bacterial AgentsDrinking WaterAntimicrobial resistance genesHigh-throughput qPCRUrban karst groundwaterUrban Resistome

Identifiers

PMID36871706
PMCPMC10449245

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.