Evidence map›Paper›PMID 36871238›Full record

ArticleArchives of virology2023

Genome sequence of Chionoecetes opilio bacilliform virus, a nimavirus infecting the snow crab Chionoecetes opilio.

Satoshi Kawato, Shoya Fujishima, Reiko Nozaki, Hidehiro Kondo, Tadashi Isshiki, Ikuo Hirono

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Satoshi Kawato *Laboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2401-5621
Shoya Fujishima *Graduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu, Mie, Japan.
Reiko NozakiLaboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan.
Hidehiro KondoLaboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan.ORCID http://orcid.org/0000-0001-5102-6831
Tadashi IsshikiGraduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu, Mie, Japan. isshiki@bio.mie-u.ac.jp.
Ikuo HironoLaboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan. hirono@kaiyodai.ac.jp.ORCID http://orcid.org/0000-0002-2355-3121
Tokyo University of Marine Science and Technology · JPMie University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nimaviridae (class Naldaviricetes) is a family of double-stranded DNA viruses infecting crustaceans, with the only officially recognized representative being white spot syndrome virus (WSSV). Chionoecetes opilio bacilliform virus (CoBV) was isolated as the causative agent of milky hemolymph disease in the snow crab Chionoecetes opilio, an economically important crustacean in the northwestern Pacific. Here, we present the complete genome sequence of CoBV and show that it is unambiguously a nimavirus. The CoBV genome is a 240-kb circular DNA molecule with 40% GC content that encodes 105 proteins, including 76 WSSV orthologs. Phylogenetic analysis based on eight naldaviral core genes established that CoBV is a member of the family Nimaviridae. The availability of the CoBV genome sequence provides a deeper understanding of CoBV pathogenicity and nimavirus evolution.

Indexed as

BadnavirusBrachyuraWhite spot syndrome virus 1AnimalsHemolymphPhylogenySeafood

Identifiers

PMID36871238
OpenAlexW4323255181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.