ArticleScientific reports2023
Local environment drives rapid shifts in composition and phylogenetic clustering of seagrass microbiomes.
Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Location and habitat specificity structure benthic microbial assemblages in a temperate seagrass ecosystem.mSphere · 2026Article
- Microbiota assembly inmSystems · 2026Article
- Seagrasses host unique and vulnerable microbiomes, structured by inter-domain microbial interactions.iScience · 2026Article
- Environmental gradients and habitat specificity structure benthic microbial assemblages in a temperate seagrass ecosystem.bioRxiv : the preprint server for biology · 2026Article
- Eelgrass microbiome and disease dynamics under field and lab heat stress.Environmental microbiome · 2025Article
- CABO-16S-a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples.NAR genomics and bioinformatics · 2025Article
- More Than a Stick in the Mud: Eelgrass Leaf and Root Bacterial Communities Are Distinct From Those on Physical Mimics.Environmental microbiology reports · 2025Article
- Functional Roles of the Seagrass (Plants (Basel, Switzerland) · 2025Article
- Exploring the structure and assembly of seagrass microbial communities in rhizosphere and phyllosphere.Applied and environmental microbiology · 2025Article
- Rhizosphere microbiomes are closely linked to seagrass species: a comparative study of three coastal seagrasses.Applied and environmental microbiology · 2024Article
- Taxonomic and functional β-diversity patterns reveal stochastic assembly rules in microbial communities of seagrass beds.Frontiers in plant science · 2024Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant microbiomes depend on environmental conditions, stochasticity, host species, and genotype identity. Eelgrass (Zostera marina) is a unique system for plant-microbe interactions as a marine angiosperm growing in a physiologically-challenging environment with anoxic sediment, periodic exposure to air at low tide, and fluctuations in water clarity and flow. We tested the influence of host origin versus environment on eelgrass microbiome composition by transplanting 768 plants among four sites within Bodega Harbor, CA. Over three months following transplantation, we sampled microbial communities monthly on leaves and roots and sequenced the V4-V5 region of the 16S rRNA gene to assess community composition. The main driver of leaf and root microbiome composition was destination site; more modest effects of host origin site did not last longer than one month. Community phylogenetic analyses suggested that environmental filtering structures these communities, but the strength and nature of this filtering varies among sites and over time and roots and leaves show opposing gradients in clustering along a temperature gradient. We demonstrate that local environmental differences create rapid shifts in associated microbial community composition with potential functional implications for rapid host acclimation under shifting environmental conditions.
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