Evidence map›Paper›PMID 36870333›Full record

ArticleStructure (London, England : 1993)2023

Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly.

Stefan Kreida, Akihiro Narita, Matthew D Johnson, Elitza I Tocheva, Anath Das, Debnath Ghosal, Grant J Jensen

Open access · greenAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Type IV Secretion System Drives Lipid Mixing.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Cryo-EM structure of the conjugation H-pilus reveals the cyclic nature of the TrhA pilin.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. ThemicroLife · 2025
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Rapid Synthesis of Cryo-ET Data for Training Deep Learning Models.bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 5 countries.

Stefan KreidaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Department of Microbiology, Tumor and Cell Biology, Karolinska Institute, 171 77 Stockholm, Sweden.
Akihiro NaritaGraduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.
Matthew D JohnsonDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia.
Elitza I TochevaDepartment of Microbiology and Immunology, Life Sciences Institute, The University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada.
Anath DasDepartment of Biochemistry, Molecular Biology and Biophysics, and Microbial and Plant Genomics Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Debnath GhosalDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia; ARC Centre for Cryo-electron Microscopy of Membrane Proteins, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia. Electronic address: debnath.ghosal@unimelb.edu.au.
Grant J JensenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84604, USA. Electronic address: grant_jensen@byu.edu.
The University of Melbourne · AUCalifornia Institute of Technology · USKarolinska Institutet · SENagoya University · JPUniversity of British Columbia · CAUniversity of Minnesota · US

Funding

Structure and Function of Pathogenesis-Associated Bacterial Structures by Electron CryotomographyR01AI127401 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRANT J JENSEN · 2016 to 2026
$3.9M
NIAID NIH HHS R01 AI127401
6 · The paper itself

Abstract

Agrobacterium tumefaciens causes crown gall disease in plants by the horizontal transfer of oncogenic DNA. The conjugation is mediated by the VirB/D4 type 4 secretion system (T4SS) that assembles an extracellular filament, the T-pilus, and is involved in mating pair formation between A. tumefaciens and the recipient plant cell. Here, we present a 3 Å cryoelectron microscopy (cryo-EM) structure of the T-pilus solved by helical reconstruction. Our structure reveals that the T-pilus is a stoichiometric assembly of the VirB2 major pilin and phosphatidylglycerol (PG) phospholipid with 5-start helical symmetry. We show that PG head groups and the positively charged Arg 91 residues of VirB2 protomers form extensive electrostatic interactions in the lumen of the T-pilus. Mutagenesis of Arg 91 abolished pilus formation. While our T-pilus structure is architecturally similar to previously published conjugative pili structures, the T-pilus lumen is narrower and positively charged, raising questions of whether the T-pilus is a conduit for ssDNA transfer.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsCryoelectron MicroscopyFimbriae, BacterialFimbriae ProteinsType IV Secretion SystemsVirulence FactorsBacterial ProteinsFimbriae ProteinsType IV Secretion SystemsVirulence FactorsAgrobacterium tumefaciensbacterial conjugationcryo-EMhelical filamentT-pilusVirB/D4 T4SS

Identifiers

PMID36870333
PMCPMC10168017
OpenAlexW4323038726

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.