Evidence map›Paper›PMID 36869744›Full record

ArticleMolecular biology and evolution2023

Global Dynamics of Porcine Enteric Coronavirus PEDV Epidemiology, Evolution, and Transmission.

Hao Zhang, Chuangchao Zou, Ouyang Peng, Usama Ashraf, Qiuping Xu, Lang Gong, Baochao Fan, Yun Zhang, Zhichao Xu, Chunyi Xue and 7 more

Open access · goldFull text read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 1 pooled it
32.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 1 synthesis or guideline pooled it, 172 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Hao ZhangState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Chuangchao ZouState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Ouyang PengState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Usama AshrafState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Qiuping XuGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China.
Lang GongState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Baochao FanInstitute of Veterinary Medicine, Jiangsu Academy of Agricultural Sciences, Key Laboratory of Veterinary Biological Engineering and Technology, Ministry of Agriculture, Nanjing, China.
Yun ZhangState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Zhichao XuState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Chunyi XueState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Xiaona WeiState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Qingfeng ZhouGuangdong Enterprise Key Laboratory for Animal Health and Environmental Control, Wen's Group Academy, Wen's Foodstuff Group Co. Ltd, Yunfu, China.
Xiaoyan TianGuangdong Enterprise Key Laboratory for Animal Health and Environmental Control, Wen's Group Academy, Wen's Foodstuff Group Co. Ltd, Yunfu, China.
Hanqin ShenGuangdong Enterprise Key Laboratory for Animal Health and Environmental Control, Wen's Group Academy, Wen's Foodstuff Group Co. Ltd, Yunfu, China.
Bin LiInstitute of Veterinary Medicine, Jiangsu Academy of Agricultural Sciences, Key Laboratory of Veterinary Biological Engineering and Technology, Ministry of Agriculture, Nanjing, China.
Xiangbin ZhangGuangdong Enterprise Key Laboratory for Animal Health and Environmental Control, Wen's Group Academy, Wen's Foodstuff Group Co. Ltd, Yunfu, China.
Yongchang CaoState Key Laboratory of Biocontrol, Life Sciences School, Sun Yat-sen University, Guangzhou, China.
Sun Yat-sen University · CNWen's Food Group (China) · CNHuazhong Agricultural University · CNJiangsu Academy of Agricultural Sciences · CNSouth China Agricultural University · CNYangzhou University · CN

Funding

National Key Research and Development Program, China 2021YFD1801101
6 · The paper itself

Abstract

With a possible origin from bats, the alphacoronavirus Porcine epidemic diarrhea virus (PEDV) causes significant hazards and widespread epidemics in the swine population. However, the ecology, evolution, and spread of PEDV are still unclear. Here, from 149,869 fecal and intestinal tissue samples of pigs collected in an 11-year survey, we identified PEDV as the most dominant virus in diarrheal animals. Global whole genomic and evolutionary analyses of 672 PEDV strains revealed the fast-evolving PEDV genotype 2 (G2) strains as the main epidemic viruses worldwide, which seems to correlate with the use of G2-targeting vaccines. The evolving pattern of the G2 viruses presents geographic bias as they evolve tachytely in South Korea but undergo the highest recombination in China. Therefore, we clustered six PEDV haplotypes in China, whereas South Korea held five haplotypes, including a unique haplotype G. In addition, an assessment of the spatiotemporal spread route of PEDV indicates Germany and Japan as the primary hubs for PEDV dissemination in Europe and Asia, respectively. Overall, our findings provide novel insights into the epidemiology, evolution, and transmission of PEDV, and thus may lay a foundation for the prevention and control of PEDV and other coronaviruses.

Indexed as

AlphacoronavirusCoronavirusCoronavirus InfectionsPorcine epidemic diarrhea virusAnimalsPhylogenySwinecoronavirusepidemiologyevolutionporcine epidemic diarrhea virustransmission

Identifiers

PMID36869744
PMCPMC10027654
OpenAlexW4323067254

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read40
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.