Evidence map›Paper›PMID 36869316›Full record

ArticleBMC plant biology2023

Integrative analysis of green ash phloem transcripts and proteins during an emerald ash borer infestation.

Christine C Chiu, Gervais Pelletier, Juliana Stival Sena, Florence Roux-Dalvai, Julien Prunier, Arnaud Droit, Armand Séguin

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. BreedingFrontiers in plant science · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Christine C ChiuLaurentian Forestry Centre, Canadian Forest Service, Natural Resources Canada, Quebec City, QC, Canada. christine.chiu.1@ulaval.ca.
Gervais PelletierLaurentian Forestry Centre, Canadian Forest Service, Natural Resources Canada, Quebec City, QC, Canada.
Juliana Stival SenaLaurentian Forestry Centre, Canadian Forest Service, Natural Resources Canada, Quebec City, QC, Canada.
Florence Roux-DalvaiCHU de Québec-Laval University Research Centre, Université Laval, QC, Quebec City, Canada.
Julien PrunierCHU de Québec-Laval University Research Centre, Université Laval, QC, Quebec City, Canada.
Arnaud DroitCHU de Québec-Laval University Research Centre, Université Laval, QC, Quebec City, Canada.
Armand SéguinLaurentian Forestry Centre, Canadian Forest Service, Natural Resources Canada, Quebec City, QC, Canada.
Natural Resources Canada · CAUniversité Laval · CACanadian Forest Service · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEmerald ash borer (Agrilus planipennis; EAB) is an Asian insect species that has been invasive to North America for 20 years. During this time, the emerald ash borer has killed tens of millions of American ash (Fraxinus spp) trees. Understanding the inherent defenses of susceptible American ash trees will provide information to breed new resistant varieties of ash trees.

resultsWe have performed RNA-seq on naturally infested green ash (F. pennsylvanica) trees at low, medium and high levels of increasing EAB infestation and proteomics on low and high levels of EAB infestation. Most significant transcript changes we detected occurred between the comparison of medium and high levels of EAB infestation, indicating that the tree is not responding to EAB until it is highly infested. Our integrative analysis of the RNA-Seq and proteomics data identified 14 proteins and 4 transcripts that contribute most to the difference between highly infested and low infested trees.

conclusionsThe putative functions of these transcripts and proteins suggests roles of phenylpropanoid biosynthesis and oxidation, chitinase activity, pectinesterase activity, strigolactone signaling, and protein turnover.

Indexed as

ColeopteraFraxinusAnimalsNorth AmericaPhloemPlant BreedingTreesEmerald ash borerForestFraxinusPlant defensePlant–insect interactionsProteomicsTranscriptomics

Identifiers

PMID36869316
PMCPMC9983263
OpenAlexW4323045072

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.