Evidence map›Paper›PMID 36869028›Full record

ArticleNature communications2023

An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation.

Khalid H Bhat, Saurabh Priyadarshi, Sarah Naiyer, Xinyan Qu, Hammad Farooq, Eden Kleiman, Jeffery Xu, Xue Lei, Jose F Cantillo, Robert Wuerffel and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 5 countries.

Khalid H Bhat *Department of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.ORCID 0000-0002-0952-7496
Saurabh Priyadarshi *Department of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.
Sarah NaiyerDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.ORCID 0000-0002-3961-5489
Xinyan QuDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.
Hammad FarooqDepartment of Bioengineering, University of Illinois Colleges of Engineering and Medicine, Chicago, IL, 60612-7344, USA.ORCID 0000-0001-5691-298X
Eden KleimanDepartment of Immunology and Microbiology, IMM-22, Scripps Research, La Jolla, CA, 92037, USA.
Jeffery XuDepartment of Immunology and Microbiology, IMM-22, Scripps Research, La Jolla, CA, 92037, USA.
Xue LeiDepartment of Bioengineering, University of Illinois Colleges of Engineering and Medicine, Chicago, IL, 60612-7344, USA.ORCID 0000-0001-9647-3782
Jose F CantilloDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.
Robert WuerffelDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA.
Nicole BaumgarthW. Harry Feinstone Dept. Molecular Microbiology and Immunology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, USA.
Jie LiangDepartment of Bioengineering, University of Illinois Colleges of Engineering and Medicine, Chicago, IL, 60612-7344, USA.ORCID 0000-0002-2773-6427
Ann J FeeneyDepartment of Immunology and Microbiology, IMM-22, Scripps Research, La Jolla, CA, 92037, USA.
Amy L KenterDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL, 60612-7344, USA. star1@uic.edu.ORCID 0000-0003-1419-5550
University of Illinois Urbana-Champaign · USScripps Research Institute · USJohns Hopkins University · USMedpace (United States) · USSher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir · IN

Funding

Chromatin infrastructure of the Igh locus and its influence on VH gene usageR01AI121286 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2016 to 2020
$4.2M
Models and Algorithms for Biological Networks and Polymers: Stochastic Probability Landscape and Chromatin EnsemblesR35GM127084 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIANG, JIE · 2018 to 2025
$3.7M
Analysis of Mbd4 function during the generation of Ig diversityR21AI133050 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2017 to 2018
$440k
NIAID NIH HHS R01 AI121286NIAID NIH HHS R21 AI133050NIGMS NIH HHS R35 GM127084
6 · The paper itself

Abstract

The mouse Igh locus is organized into a developmentally regulated topologically associated domain (TAD) that is divided into subTADs. Here we identify a series of distal V

Indexed as

B-LymphocytesImmunoglobulin Heavy ChainsRegulatory Sequences, Nucleic AcidAnimalsChromatinChromosome AberrationsMiceReceptors, AntigenChromatinImmunoglobulin Heavy ChainsReceptors, Antigen

Identifiers

PMID36869028
PMCPMC9984487
OpenAlexW4323048409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.