Evidence map›Paper›PMID 36866517›Full record

ArticleFEMS microbiology letters2023

Agl28 and Agl29 are key components of a Halobacterium salinarum N-glycosylation pathway.

Zlata Vershinin, Marianna Zaretsky, Ziqiang Guan, Jerry Eichler

Open access · greenAbstract read
In one paragraph

Article in FEMS microbiology letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Zlata VershininDepartment of Life Sciences, Ben-Gurion University of the Negev, PO Box 653, Beersheva 84105, Israel.
Marianna ZaretskyDepartment of Life Sciences, Ben-Gurion University of the Negev, PO Box 653, Beersheva 84105, Israel.
Ziqiang GuanDepartment of Biochemistry, Duke University Medical Center, Durham, NC 27710, United States.
Jerry EichlerDepartment of Life Sciences, Ben-Gurion University of the Negev, PO Box 653, Beersheva 84105, Israel.ORCID 0000-0001-9409-8026
Ben-Gurion University of the Negev · ILDuke Medical Center · US

Funding

Adaptive alterations of lipids in mitis group streptococciR01AI148366 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI GUAN, ZIQIANG, PALMER, KELLI LEA · 2020 to 2024
$2.5M
NIAID NIH HHS R01 AI148366NIH HHS R01AI148366
6 · The paper itself

Abstract

Although Halobacterim salinarum provided the first example of N-glycosylation outside the Eukarya, only recently has attention focused on delineating the pathway responsible for the assembly of the N-linked tetrasaccharide decorating selected proteins in this haloarchaeon. In the present report, the roles of VNG1053G and VNG1054G, two proteins encoded by genes clustered together with a set of genes demonstrated to encode N-glycosylation pathway components, were considered. Relying on both bioinformatics and gene deletion and subsequent mass spectrometry analysis of known N-glycosylated proteins, VNG1053G was determined to be the glycosyltransferase responsible for addition of the linking glucose, while VNG1054G was deemed to be the flippase that translocates the lipid-bound tetrasaccharide across the plasma membrane to face the cell exterior, or to contribute to such activity. As observed with Hbt. salinarum lacking other components of the N-glycosylation machinery, both cell growth and motility were compromised in the absence of VNG1053G or VNG1054G. Thus, given their demonstrated roles in Hbt. salinarum N-glycosylation, VNG1053G and VNG1054G were re-annotated as Agl28 and Agl29, according to the nomenclature used to define archaeal N-glycosylation pathway components.

Indexed as

Archaeal ProteinsHalobacterium salinarumGlycosylationGlycosyltransferasesMass SpectrometryOligosaccharidesArchaeal ProteinsGlycosyltransferasesOligosaccharidesarchaeaglycoproteinsglycosyltransferaseHalobacterium salinarumN-glycosylation

Identifiers

PMID36866517
PMCPMC10022576
OpenAlexW4323036822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.