Evidence map›Paper›PMID 36866106›Full record

ArticleFrontiers in molecular biosciences2022

Whole genome sequencing of Malaysian colorectal cancer patients reveals specific druggable somatic mutations.

Ryia Illani Mohd Yunos, Nurul-Syakima Ab Mutalib, Jia-Shiun Khoo, Sazuita Saidin, Muhiddin Ishak, Saiful Effendi Syafruddin, Francis Yew Fu Tieng, Najwa Farhah Md Yusof, Mohd Ridhwan Abd Razak, Norshahidah Mahamad Nadzir and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Ryia Illani Mohd YunosUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Nurul-Syakima Ab MutalibUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Jia-Shiun KhooCodon Genomics SB, Seri Kembangan, Selangor, Malaysia.
Sazuita SaidinUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Muhiddin IshakUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Saiful Effendi SyafruddinUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Francis Yew Fu TiengUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Najwa Farhah Md YusofUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Mohd Ridhwan Abd RazakUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Norshahidah Mahamad NadzirUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Nadiah AbuUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
Isa Md RoseDepartment of Pathology, Faculty of Medicine, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia.
Ismail SagapDepartment of Surgery, Faculty of Medicine, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia.
Luqman MazlanDepartment of Surgery, Faculty of Medicine, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia.
Rahman JamalUKM Medical Molecular Biology Institute (UMBI), Kuala Lumpur, Malaysia.
National University of Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The incidences of colorectal cancer (CRC) are continuously increasing in some areas of the world, including Malaysia. In this study, we aimed to characterize the landscape of somatic mutations using the whole-genome sequencing approach and identify druggable somatic mutations specific to Malaysian patients. Whole-genome sequencing was performed on the genomic DNA obtained from 50 Malaysian CRC patients' tissues. We discovered the top significantly mutated genes were APC, TP53, KRAS, TCF7L2 and ACVR2A. Four novel, non-synonymous variants were identified in three genes, which were KDM4E, MUC16 and POTED. At least one druggable somatic alteration was identified in 88% of our patients. Among them were two frameshift mutations in

Indexed as

druggable alterationsKDM4EMalaysians colorectal cancerMUC16POTEDprecision medicineRNF43whole genome sequencing

Identifiers

PMID36866106
PMCPMC9972984
OpenAlexW4320718520

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.