Evidence map›Paper›PMID 36865290›Full record

ArticlebioRxiv : the preprint server for biology2023

Determination of oligomeric organization of membrane proteins from native membranes at nanoscale-spatial and single-molecule resolution.

Gerard Walker, Caroline Brown, Xiangyu Ge, Shailesh Kumar, Mandar D Muzumdar, Kallol Gupta, Moitrayee Bhattacharyya

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Caroline Brown
Xiangyu Ge
Shailesh Kumar
Mandar D Muzumdar
Kallol Gupta
Moitrayee BhattacharyyaORCID 0000-0002-2168-1541
Yale University · USYale Cancer Center · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI MEGAN C KING · 1985 to 2026
$85.0M
Understanding how membrane composition directs membrane protein structure and functionRM1GM149406 · NIGMS · YALE UNIVERSITY · PI Joel Adam Butterwick, KATHRYN M FERGUSON · 2023 to 2026
$8.4M
Defining tumor cell and host adaptations in cancer progressionDP2CA248136 · NCI · YALE UNIVERSITY · PI MUZUMDAR, MANDAR DEEPAK · 2019 to 2019
$2.5M
Molecular mechanism of regulation and activation of membrane proteins in native membrane milieuR35GM147095 · NIGMS · YALE UNIVERSITY · PI Moitrayee Bhattacharyya · 2022 to 2026
$2.0M
Understanding organization of membrane proteins and lipids through lipid vesicle native mass spectrometryR01GM141192 · NIGMS · YALE UNIVERSITY · PI GUPTA, KALLOL · 2021 to 2025
$1.9M
Elucidating KRAS-specific vulnerabilities in pancreatic cancerK08CA208016 · NCI · YALE UNIVERSITY · PI MUZUMDAR, MANDAR DEEPAK · 2016 to 2020
$880k
Uncovering the molecular mechanism of learning and memory with an emphasis on Down SyndromeR00GM126145 · NIGMS · YALE UNIVERSITY · PI BHATTACHARYYA, MOITRAYEE · 2020 to 2022
$747k
NCI NIH HHS DP2 CA248136NCI NIH HHS K08 CA208016NCI NIH HHS P30 CA016359NIGMS NIH HHS R00 GM126145NIGMS NIH HHS R01 GM141192NIGMS NIH HHS R35 GM147095NIGMS NIH HHS RM1 GM149406
6 · The paper itself

Abstract

The oligomeric organization of membrane proteins in native cell membranes is a critical regulator of their function. High-resolution quantitative measurements of oligomeric assemblies and how they change under different conditions are indispensable to the understanding of membrane protein biology. We report a single-molecule imaging technique (Native-nanoBleach) to determine the oligomeric distribution of membrane proteins directly from native membranes at an effective spatial resolution of ∼10 nm. We achieved this by capturing target membrane proteins in "native nanodiscs" with their proximal native membrane environment using amphipathic copolymers. We established this method using structurally and functionally diverse membrane proteins with well-established stoichiometries. We then applied Native-nanoBleach to quantify the oligomerization status of a receptor tyrosine kinase (TrkA) and a small GTPase (KRas) under conditions of growth-factor binding or oncogenic mutations, respectively. Native-nanoBleach provides a sensitive, single-molecule platform to quantify membrane protein oligomeric distributions in native membranes at an unprecedented spatial resolution.

Identifiers

PMID36865290
PMCPMC9980011
OpenAlexW4321441508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.