Evidence map›Paper›PMID 36864746›Full record

ArticleNucleic acids research2023

A virus-borne DNA damage signaling pathway controls the lysogeny-induction switch in a group of temperate pleolipoviruses.

Zhao Chen, Ying Liu, Yixuan Wang, Xincheng Du, Xiaoyuan Deng, Jialin Xiang, Yangyang Wang, Jiao Wang, Mart Krupovic, Shishen Du and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Zhao ChenState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Ying LiuInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, F-75015Paris, France.
Yixuan WangState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Xincheng DuState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Xiaoyuan DengState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Jialin XiangState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Yangyang WangState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Jiao WangState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Mart KrupovicInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, F-75015Paris, France.ORCID 0000-0001-5486-0098
Shishen DuState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.ORCID 0000-0002-9809-8653
Xiangdong ChenState Key laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Wuhan University · CNCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many prokaryotic viruses are temperate and their reactivation is tightly regulated. However, except for a few bacterial model systems, the regulatory circuits underlying the exit from lysogeny are poorly understood, especially in archaea. Here, we report a three-gene module which regulates the switch between lysogeny and replicative cycle in a haloarchaeal virus SNJ2 (family Pleolipoviridae). The SNJ2 orf4 encodes a winged helix-turn-helix DNA binding protein which maintains lysogeny through repressing the expression of the viral integrase gene intSNJ2. To switch to the induced state, two other SNJ2-encoded proteins, Orf7 and Orf8, are required. Orf8 is a homolog of cellular AAA+ ATPase Orc1/Cdc6, which is activated upon mitomycin C-induced DNA damage, possibly through posttranslational modification. Activated Orf8 initiates the expression of Orf7 which, in turn, antagonizes the function of Orf4, leading to the transcription of intSNJ2, thereby switching SNJ2 to the induced state. Comparative genomics analysis revealed that the SNJ2-like Orc1/Cdc6-centered three-gene module is common in haloarchaeal genomes, always present in the context of integrated proviruses. Collectively, our results uncover the first DNA damage signaling pathway encoded by a temperate archaeal virus and reveal an unexpected role of the widely distributed virus-encoded Orc1/Cdc6 homologs.

Indexed as

LysogenyVirusesDNA DamageDNA, ViralDNA VirusesProvirusesSignal TransductionDNA, Viral

Identifiers

PMID36864746
PMCPMC10123103
OpenAlexW4323031949

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.