Evidence map›Paper›PMID 36864192›Full record

ArticleNature chemical biology2023

A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.

Toshihiko Katoh, Chihaya Yamada, Michael D Wallace, Ayako Yoshida, Aina Gotoh, Moe Arai, Takako Maeshibu, Toma Kashima, Arno Hagenbeek, Miriam N Ojima and 12 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 47 citations in OpenAlex.

  1. Discovery of a secretedGut microbes · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Food-grade TiOJournal of nanobiotechnology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mucinase fromFrontiers in microbiology · 2026
    Article
  11. Gut microbes · 2025
    Article
  12. Review
  13. Review
  14. The role of glycosylated mucins in maintaining intestinal homeostasis and gut health.Animal nutrition (Zhongguo xu mu shou yi xue hui) · 2025
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Prebiotic effect of galacto-Applied and environmental microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 3 countries.

Toshihiko KatohGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Chihaya YamadaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Michael D WallaceSchool of Molecular Sciences, The University of Western Australia, Crawley, WA, Australia.ORCID 0000-0003-1408-7234
Ayako YoshidaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.ORCID 0000-0002-3668-9001
Aina GotohGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Moe AraiGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Takako MaeshibuGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Toma KashimaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Arno HagenbeekLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.
Miriam N OjimaGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID 0000-0002-5173-208X
Hiromi TakadaGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Mikiyasu SakanakaGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Hidenori ShimizuGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Keita NishiyamaDepartment of Microbiology, School of Pharmacy, Kitasato University, Minato-ku, Tokyo, Japan.
Hisashi AshidaFaculty of Biology-Oriented Science and Technology, Kindai University, Kinokawa, Wakayama, Japan.ORCID 0000-0001-5844-4075
Junko HiroseSchool of Human Cultures, The University of Shiga Prefecture, Hikone, Shiga, Japan.
Maria Suarez-DiezLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.
Makoto NishiyamaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.ORCID 0000-0001-8143-8052
Ikuo KimuraGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID 0000-0001-8778-145X
Keith A StubbsSchool of Molecular Sciences, The University of Western Australia, Crawley, WA, Australia.ORCID 0000-0001-6899-402X
Shinya FushinobuGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan. asfushi@mail.ecc.u-tokyo.ac.jp.ORCID 0000-0003-1346-6435
Takane KatayamaGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan. takane@lif.kyoto-u.ac.jp.ORCID 0000-0003-4009-7874
Kyoto University · JPThe University of Tokyo · JPThe University of Western Australia · AUWageningen University & Research · NLKindai University · JPKitasato University · JPUniversity of Shiga Prefecture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mucinolytic bacteria modulate host-microbiota symbiosis and dysbiosis through their ability to degrade mucin O-glycans. However, how and to what extent bacterial enzymes are involved in the breakdown process remains poorly understood. Here we focus on a glycoside hydrolase family 20 sulfoglycosidase (BbhII) from Bifidobacterium bifidum, which releases N-acetylglucosamine-6-sulfate from sulfated mucins. Glycomic analysis showed that, in addition to sulfatases, sulfoglycosidases are involved in mucin O-glycan breakdown in vivo and that the released N-acetylglucosamine-6-sulfate potentially affects gut microbial metabolism, both of which were also supported by a metagenomic data mining analysis. Enzymatic and structural analysis of BbhII reveals the architecture underlying its specificity and the presence of a GlcNAc-6S-specific carbohydrate-binding module (CBM) 32 with a distinct sugar recognition mode that B. bifidum takes advantage of to degrade mucin O-glycans. Comparative analysis of the genomes of prominent mucinolytic bacteria also highlights a CBM-dependent O-glycan breakdown strategy used by B. bifidum.

Indexed as

EcosystemMucinsBacteriaPolysaccharidesMucinsPolysaccharides

Identifiers

PMID36864192
OpenAlexW4322766874

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.