Evidence map›Paper›PMID 36862748›Full record

ArticleeLife2023

Peptides that Mimic RS repeats modulate phase separation of SRSF1, revealing a reliance on combined stacking and electrostatic interactions.

Talia Fargason, Naiduwadura Ivon Upekala De Silva, Erin Powell, Zihan Zhang, Trenton Paul, Jamal Shariq, Steve Zaharias, Jun Zhang

Open access · goldFull text read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Non-Enzymatic MGO-Glycation of SRSF2 Drives RNA Mis-Splicing.Journal of the American Chemical Society · 2026
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  6. Review
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  13. SRSF1 interactome determined by proximity labeling reveals direct interaction with spliceosomal RNA helicase DDX23.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Talia FargasonDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.ORCID 0000-0001-6888-0356
Naiduwadura Ivon Upekala De SilvaDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.ORCID 0000-0002-5937-0271
Erin PowellDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.
Zihan ZhangDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.
Trenton PaulDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.ORCID 0009-0000-0931-3888
Jamal ShariqDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.
Steve ZahariasDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.
Jun ZhangDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, United States.ORCID 0000-0002-5842-7424
University of Alabama at Birmingham · US

Funding

The central roles of SRSF1 in early-stage spliceosome assemblyR35GM147091 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Jun Zhang · 2022 to 2026
$2.0M
NIGMS NIH HHS R35 GM147091NIH HHS R35GM147091
6 · The paper itself

Abstract

Phase separation plays crucial roles in both sustaining cellular function and perpetuating disease states. Despite extensive studies, our understanding of this process is hindered by low solubility of phase-separating proteins. One example of this is found in SR and SR-related proteins. These proteins are characterized by domains rich in arginine and serine (RS domains), which are essential to alternative splicing and in vivo phase separation. However, they are also responsible for a low solubility that has made these proteins difficult to study for decades. Here, we solubilize the founding member of the SR family, SRSF1, by introducing a peptide mimicking RS repeats as a co-solute. We find that this RS-mimic peptide forms interactions similar to those of the protein's RS domain. Both interact with a combination of surface-exposed aromatic residues and acidic residues on SRSF1's RNA Recognition Motifs (RRMs) through electrostatic and cation-pi interactions. Analysis of RRM domains from human SR proteins indicates that these sites are conserved across the protein family. In addition to opening an avenue to previously unavailable proteins, our work provides insight into how SR proteins phase separate and participate in nuclear speckles.

Indexed as

Alternative SplicingNuclear ProteinsArginineHumansPeptidesPhosphorylationRNA SplicingSerineSerine-Arginine Splicing FactorsStatic ElectricityArginineNuclear ProteinsPeptidesSerineSerine-Arginine Splicing FactorsSRSF1 protein, humancation-pi interactionhumanintrinsically disordered proteinmolecular biophysicsNMRphase separationSR proteinsSRSF1structural biology

Identifiers

PMID36862748
PMCPMC10023157
OpenAlexW4322757989

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read66
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.