Evidence map›Paper›PMID 36862244›Full record

ArticleJournal of endocrinological investigation2023

The role of single nucleotide variant rs3819817 of the Histidine Ammonia-Lyase gene and 25-Hydroxyvitamin D on bone mineral density, adiposity markers, and skin pigmentation, in Mexican population.

B Rivera-Paredez, A Hidalgo-Bravo, G León-Reyes, F Barajas-Olmos, A Martínez-Hernández, L Orozco, E Denova-Gutiérrez, J Salmerón, R Velázquez-Cruz

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Article in Journal of endocrinological investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

B Rivera-ParedezCentro de Investigación en Políticas, Población y Salud de la Facultad de Medicina de la Universidad Nacional Autónoma de México (UNAM), Mexico City, México.ORCID http://orcid.org/0000-0002-9845-024X
A Hidalgo-BravoDepartamento de Genética, Instituto Nacional de Rehabilitación, Mexico City, México.ORCID http://orcid.org/0000-0003-2506-8784
G León-ReyesLaboratorio de Genómica del Metabolismo Óseo, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, México.ORCID http://orcid.org/0000-0003-0291-2620
F Barajas-OlmosLaboratorio de Inmunogenómica y Enfermedades Metabólicas, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, México.ORCID http://orcid.org/0000-0001-5064-6203
A Martínez-HernándezLaboratorio de Inmunogenómica y Enfermedades Metabólicas, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, México.ORCID http://orcid.org/0000-0001-9883-2988
L OrozcoLaboratorio de Inmunogenómica y Enfermedades Metabólicas, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, México.ORCID http://orcid.org/0000-0002-1250-1203
E Denova-GutiérrezCentro de Investigación en Nutrición y Salud, Instituto Nacional de Salud Pública (INSP), Cuernavaca, Morelos, México.ORCID http://orcid.org/0000-0001-9671-9682
J SalmerónCentro de Investigación en Políticas, Población y Salud de la Facultad de Medicina de la Universidad Nacional Autónoma de México (UNAM), Mexico City, México.ORCID http://orcid.org/0000-0002-5113-299X
R Velázquez-CruzLaboratorio de Genómica del Metabolismo Óseo, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, México. rvelazquez@inmegen.gob.mx.ORCID http://orcid.org/0000-0003-4515-0777
National Institute of Genomic Medicine · MXUniversidad Nacional Autónoma de México · MXInstituto Nacional de Rehabilitación · MXInstituto Nacional de Salud Pública · MX

Funding

Consejo Nacional de Ciencia y Tecnología 262233Consejo Nacional de Ciencia y Tecnología 26267MConsejo Nacional de Ciencia y Tecnología 7876Consejo Nacional de Ciencia y Tecnología 87783Consejo Nacional de Ciencia y Tecnología CB-2013-01-221628Consejo Nacional de Ciencia y Tecnología CF-2019-102962Consejo Nacional de Ciencia y Tecnología SALUD-2010-01-139796Consejo Nacional de Ciencia y Tecnología SALUD-2011-01-161930
6 · The paper itself

Abstract

purposeVitamin D (VD) deficiency and osteoporosis have become a global public health problem. A variant in the Histidine Ammonia-Lyase (HAL) gene has been associated with VD levels and bone mineral density (BMD). However, whether this variant has an influence on VD levels and BMD in Mexican adults remain unclear.

methodsThis cross-sectional analysis included 1,905 adults participating in the Health Worker Cohort Study and 164 indigenous postmenopausal women from the Metabolic Analysis in an Indigenous Sample (MAIS) cohort. The rs3819817 variant was genotyped by TaqMan probe assay. Total 25 hydroxyvitamin D levels were measured by DiaSorin Liaison. BMD at the different sites was assessed through dual-energy X-ray absorptiometry. Linear and logistic regression models were performed to evaluate the associations of interest.

resultsThe prevalence of VD deficiency was 41%, showing differences between sexes. Obesity and skin pigmentation were associated with lower levels of VD in males and females. rs3819817-T allele was associated with low levels of 25-hydroxyvitamin D, VD deficiency, and hip and femoral neck BMD values (g/cm

conclusionOur findings confirm that the genetic variant rs3819817 has an essential function in VD levels and BMD and suggests a role in skin pigmentation in the Mexican population.

Indexed as

Bone DensityVitamin D DeficiencyAbsorptiometry, PhotonAdiposityAdultCalcifediolCohort StudiesCross-Sectional StudiesFemaleHistidine Ammonia-LyaseHumansMaleNucleotidesObesitySkin PigmentationVitamin D25-hydroxyvitamin DCalcifediolHistidine Ammonia-LyaseNucleotidesVitamin D25-Hydroxivitamin DAdiposityBone mineral densityrs3819817Skin pigmentation

Identifiers

PMID36862244
OpenAlexW4322757529

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.