Evidence map›Paper›PMID 36857387›Full record

ArticlePLoS genetics2023

The RNA binding protein DND1 is elevated in a subpopulation of pro-spermatogonia and targets chromatin modifiers and translational machinery during late gestation.

Victor A Ruthig, Talia Hatkevich, Josiah Hardy, Matthew B Friedersdorf, Chloé Mayère, Serge Nef, Jack D Keene, Blanche Capel

Open access · goldFull text read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Victor A RuthigSexual Medicine Lab, Department of Urology, Weill Cornell Medicine, New York, New York, United States of America.ORCID 0000-0003-1126-6106
Talia HatkevichDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Josiah HardyDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Matthew B FriedersdorfDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Chloé MayèreDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-9254-4886
Serge NefDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Jack D KeeneDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Blanche CapelDepartment of Cell Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Duke Medical Center · USUniversity of Geneva · CHCornell University · US

Funding

Opposing Pathways in Mammalian Sex DeterminationR37HD039963 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2011 to 2020
$3.5M
DND1 Mediates Epigenetic Reprogramming During Cell Cycle Arrest In Male Germ CellsR01HD103064 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2021 to 2025
$2.0M
Intravital point-scanning confocal microscopeS10RR027867 · NCRR · DUKE UNIVERSITY · PI CHILKOTI, ASHUTOSH · 2010 to 2010
$500k
DND1 Mediated Posttranscriptional Regulation in Murine Prospermatogonia During G1/G0 ArrestF32GM129956 · NIGMS · DUKE UNIVERSITY · PI RUTHIG, VICTOR A. · 2018 to 2020
$140k
NCRR NIH HHS S10 RR027867NICHD NIH HHS R01 HD103064NICHD NIH HHS R37 HD039963NIGMS NIH HHS F32 GM129956
6 · The paper itself

Abstract

DND1 is essential to maintain germ cell identity. Loss of Dnd1 function results in germ cell differentiation to teratomas in some inbred strains of mice or to somatic fates in zebrafish. Using our knock-in mouse line in which a functional fusion protein between DND1 and GFP is expressed from the endogenous locus (Dnd1GFP), we distinguished two male germ cell (MGC) populations during late gestation cell cycle arrest (G0), consistent with recent reports of heterogeneity among MGCs. Most MGCs express lower levels of DND1-GFP (DND1-GFP-lo), but some MGCs express elevated levels of DND1-GFP (DND1-GFP-hi). A RNA-seq time course confirmed high Dnd1 transcript levels in DND1-GFP-hi cells along with 5-10-fold higher levels for multiple epigenetic regulators. Using antibodies against DND1-GFP for RNA immunoprecipitation (RIP)-sequencing, we identified multiple epigenetic and translational regulators that are binding targets of DND1 during G0 including DNA methyltransferases (Dnmts), histone deacetylases (Hdacs), Tudor domain proteins (Tdrds), actin dependent regulators (Smarcs), and a group of ribosomal and Golgi proteins. These data suggest that in DND1-GFP-hi cells, DND1 hosts coordinating mRNA regulons that consist of functionally related and localized groups of epigenetic enzymes and translational components.

Indexed as

SpermatogoniaZebrafishAnimalsChromatinFemaleMaleMiceNeoplasm ProteinsPregnancyRNA-Binding ProteinsChromatinDnd1 protein, mouseNeoplasm ProteinsRNA-Binding Proteins

Identifiers

PMID36857387
PMCPMC10010562
OpenAlexW4322719419

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read74
identifiers read11
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.