Evidence map›Paper›PMID 36857153›Full record

ArticleMolecular biology of the cell2023

Exploring the consequences of redirecting an exocytic Rab onto endocytic vesicles.

Xia Li, Dongmei Liu, Eric Griffis, Peter Novick

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Xia LiDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0644.
Dongmei LiuDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0644.
Eric GriffisNikon Imaging Center, University of California, San Diego, La Jolla, CA 92093-0694.ORCID 0000-0002-2832-6649
Peter NovickDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0644.ORCID 0000-0003-0401-7857

Funding

GENETICS OF SECRETION IN YEASTR01GM035370 · NIGMS · YALE UNIVERSITY · PI PETER Jay NOVICK · 1985 to 2026
$7.0M
Coordination of membrane traffic through rab GEF and GAP cascadesR01GM082861 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOVICK, PETER JAY · 2008 to 2020
$4.4M
Genetics of Secretion in YeastR37GM035370 · NIGMS · YALE UNIVERSITY · PI NOVICK, PETER JAY · 2001 to 2010
$3.9M
NIGMS NIH HHS R01 GM035370NIGMS NIH HHS R01 GM082861NIGMS NIH HHS R37 GM035370
6 · The paper itself

Abstract

Bidirectional vesicular traffic links compartments along the exocytic and endocytic pathways. Rab GTPases have been implicated in specifying the direction of vesicular transport. To explore this possibility, we sought to redirect an exocytic Rab, Sec4, onto endocytic vesicles by fusing the catalytic domain of the Sec4 GEF, Sec2, onto the CUE localization domain of Vps9, a GEF for the endocytic Rab Ypt51. The Sec2GEF-GFP-CUE construct localized to bright puncta predominantly near sites of polarized growth, and this localization was dependent on the ability of the CUE domain to bind to the ubiquitin moieties added to the cytoplasmic tails of proteins destined for endocytic internalization. Sec4 and Sec4 effectors were recruited to these puncta with various efficiencies. Cells expressing Sec2GEF-GFP-CUE grew surprisingly well and secreted protein at near-normal efficiency, implying that Golgi-derived secretory vesicles were delivered to polarized sites of cell growth despite the misdirection of Sec4 and its effectors. A low efficiency mechanism for localization of Sec2 to secretory vesicles that is independent of known cues might be responsible. In total, the results suggest that while Rabs may play a critical role in specifying the direction of vesicular transport, cells are remarkably tolerant of Rab misdirection.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGuanine Nucleotide Exchange FactorsSecretory VesiclesVesicular Transport ProteinsGuanine Nucleotide Exchange FactorsSaccharomyces cerevisiae ProteinsSEC2 protein, S cerevisiaeVesicular Transport ProteinsVPS9 protein, S cerevisiae

Identifiers

PMID36857153
PMCPMC10162416

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.