Evidence map›Paper›PMID 36856115›Full record

ArticleThe Journal of clinical investigation2023

Single-cell RNA sequencing and spatial transcriptomics reveal cancer-associated fibroblasts in glioblastoma with protumoral effects.

Saket Jain, Jonathan W Rick, Rushikesh S Joshi, Angad Beniwal, Jordan Spatz, Sabraj Gill, Alexander Chih-Chieh Chang, Nikita Choudhary, Alan T Nguyen, Sweta Sudhir and 14 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
27.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 178 citations in OpenAlex.

  1. Article
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  4. Biomimetic Scaffold-Based 3D Models for Decoding Cancer Biology and Advancing Therapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. FAPExperimental & molecular medicine · 2026
    Article
  6. Tumor-Derived LAMB3 Drives Immunosuppressive LRRC15Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  7. Review
  8. Article
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  20. Review

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 2 countries.

Saket JainDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Jonathan W RickDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Rushikesh S JoshiDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Angad BeniwalDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Jordan SpatzDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Sabraj GillDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Alexander Chih-Chieh ChangDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Nikita ChoudharyDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Alan T NguyenDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Sweta SudhirDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Eric J ChalifDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Jia-Shu ChenDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Ankush ChandraDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Alexander F HaddadDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Harsh WadhwaDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Sumedh S ShahDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Serah ChoiDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Josie L HayesDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Lin WangDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Garima YagnikDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Joseph F CostelloDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Aaron DiazDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Dieter Henrik HeilandDepartment of Neurosurgery, University of Freiburg, Breisgau, Germany.
Manish K AghiDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
University of California, San Francisco · USUniversity of Freiburg · DE

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Susan M Chang · 2002 to 2026
$57.4M
Tumor cell and microenvironment changes causing antiangiogenic therapy resistanceR01NS079697 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGHI, MANISH · 2013 to 2021
$3.2M
Modeling and druggable-genome screening of glioblastoma invasion using regional biopsy-guided biomaterials systemsR01CA227136 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGHI, MANISH · 2018 to 2022
$2.2M
Retroviral RLI immunomodulatory gene therapy for glioblastomaR01NS123808 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Manish Aghi · 2022 to 2026
$2.1M
An informatics framework for single-cell multi-omics from clinical specimensR01LM013897 · NLM · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aaron Antonio Diaz · 2022 to 2026
$1.8M
Mechanisms of adhesion and invasion in hyaluronic acid matricesR01CA260443 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2021 to 2025
$1.8M
PRISM: Precision Radiotherapy and Imaging of Small MammalsS10OD021818 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FADDEGON, BRUCE · 2017 to 2017
$531k
NCI NIH HHS P30 CA082103NCI NIH HHS P50 CA097257NCI NIH HHS R01 CA227136NCI NIH HHS R01 CA260443NIH HHS S10 OD021818NINDS NIH HHS R01 NS079697NINDS NIH HHS R01 NS123808NLM NIH HHS R01 LM013897
6 · The paper itself

Abstract

Cancer-associated fibroblasts (CAFs) were presumed absent in glioblastoma given the lack of brain fibroblasts. Serial trypsinization of glioblastoma specimens yielded cells with CAF morphology and single-cell transcriptomic profiles based on their lack of copy number variations (CNVs) and elevated individual cell CAF probability scores derived from the expression of 9 CAF markers and absence of 5 markers from non-CAF stromal cells sharing features with CAFs. Cells without CNVs and with high CAF probability scores were identified in single-cell RNA-Seq of 12 patient glioblastomas. Pseudotime reconstruction revealed that immature CAFs evolved into subtypes, with mature CAFs expressing actin alpha 2, smooth muscle (ACTA2). Spatial transcriptomics from 16 patient glioblastomas confirmed CAF proximity to mesenchymal glioblastoma stem cells (GSCs), endothelial cells, and M2 macrophages. CAFs were chemotactically attracted to GSCs, and CAFs enriched GSCs. We created a resource of inferred crosstalk by mapping expression of receptors to their cognate ligands, identifying PDGF and TGF-β as mediators of GSC effects on CAFs and osteopontin and HGF as mediators of CAF-induced GSC enrichment. CAFs induced M2 macrophage polarization by producing the extra domain A (EDA) fibronectin variant that binds macrophage TLR4. Supplementing GSC-derived xenografts with CAFs enhanced in vivo tumor growth. These findings are among the first to identify glioblastoma CAFs and their GSC interactions, making them an intriguing target.

Indexed as

Cancer-Associated FibroblastsGlioblastomaDNA Copy Number VariationsEndothelial CellsHumansSequence Analysis, RNATranscriptomeBrain cancerFibronectinOncology

Identifiers

PMID36856115
PMCPMC9974099
OpenAlexW4322624779

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.