Evidence map›Paper›PMID 36856012›Full record

ArticleFEBS letters2023

Long noncoding RNAs are substrates for cytoplasmic capping enzyme.

Avik Mukherjee, Safirul Islam, Rachel E Kieser, Daniel L Kiss, Chandrama Mukherjee

Abstract read
In one paragraph

Article in FEBS letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Avik MukherjeeInstitute of Health Sciences, Presidency University, Kolkata, India.ORCID 0000-0001-9166-7326
Safirul IslamInstitute of Health Sciences, Presidency University, Kolkata, India.ORCID 0000-0001-5859-1331
Rachel E KieserCenter for RNA Therapeutics, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, USA.ORCID 0000-0003-1820-0193
Daniel L KissCenter for RNA Therapeutics, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, USA.ORCID 0000-0001-5033-7160
Chandrama MukherjeeInstitute of Health Sciences, Presidency University, Kolkata, India.ORCID 0000-0002-4749-1295

Funding

Understanding the mechanisms that regulate cytoplasmic capping and defining itscontributions to post-transcriptional gene regulation (Same as parent grant)R35GM137819 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI KISS, DANIEL LOUIS · 2020 to 2024
$2.3M
NIGMS NIH HHS R35 GM137819
6 · The paper itself

Abstract

Cytoplasmic capping returns a cap to specific mRNAs, thus protecting uncapped RNAs from decay. Prior to the identification of cytoplasmic capping, uncapped mRNAs were thought to be degraded. Here, we test whether long noncoding RNAs (lncRNAs) are substrates of the cytoplasmic capping enzyme (cCE). The subcellular localisation of 14 lncRNAs associated with sarcomas were examined in U2OS osteosarcoma cells. We used 5' rapid amplification of cDNA ends (RACE) to assay uncapped forms of these lncRNAs. Inhibiting cytoplasmic capping elevated uncapped forms of selected lncRNAs indicating a plausible role of cCE in targeting them. Analysis of published cap analysis of gene expression (CAGE) data shows increased prevalence of certain 5'-RACE cloned sequences, suggesting that these uncapped lncRNAs are targets of cytoplasmic capping.

Indexed as

RNA, Long NoncodingCytoplasmCytosolRNA CapsRNA, MessengerRNA CapsRNA, Long NoncodingRNA, Messenger5′-RACECAGEcytoplasmic cappinglncRNAuncapped RNA ends

Identifiers

PMID36856012
PMCPMC11119571

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.