Evidence map›Paper›PMID 36854302›Full record

ArticleMolecular cell2023

SLFN5-mediated chromatin dynamics sculpt higher-order DNA repair topology.

Jinzhou Huang, Chenming Wu, Jake A Kloeber, Huanyao Gao, Ming Gao, Qian Zhu, Yiming Chang, Fei Zhao, Guijie Guo, Kuntian Luo and 13 more

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 2 countries.

Jinzhou HuangDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Chenming WuKey Laboratory of Arrhythmias of the Ministry of Education of China, Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, China.
Jake A KloeberDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA; Medical Scientist Training Program, Mayo Clinic, Rochester, MN 55905, USA.
Huanyao GaoDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN 55905, USA.
Ming GaoDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Qian ZhuDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Yiming ChangJinzhou Medical University, Shanghai East Hospital, Shanghai 200120, China.
Fei ZhaoDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Guijie GuoDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Kuntian LuoDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Haiming DaiDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Sijia LiuDepartment of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN 55905, USA.
Qiru HuangDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Wootae KimDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Qin ZhouDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Shouhai ZhuDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Zheming WuDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Xinyi TuDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Ping YinDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Min DengDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Liewei WangDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN 55905, USA.
Jian YuanKey Laboratory of Arrhythmias of the Ministry of Education of China, Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, China; Department of Biochemistry and Molecular Biology, Tongji University School of Medicine, Shanghai 200092, China. Electronic address: yuanjian229@hotmail.com.
Zhenkun LouDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA. Electronic address: lou.zhenkun@mayo.edu.
Mayo Clinic in Arizona · USShanghai East Hospital · CNWinnMed · USMayo Clinic · USMayo Clinic in Florida · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
Medical Scientist Traning Program at Mayo ClinicT32GM065841 · NIGMS · MAYO CLINIC ROCHESTER · PI KAUFMANN, SCOTT H, SCHIMMENTI, LISA A · 2003 to 2022
$5.8M
NCI NIH HHS P30 CA015083NIGMS NIH HHS T32 GM065841
6 · The paper itself

Abstract

Repair of DNA double-strand breaks (DSBs) elicits three-dimensional (3D) chromatin topological changes. A recent finding reveals that 53BP1 assembles into a 3D chromatin topology pattern around DSBs. How this formation of a higher-order structure is configured and regulated remains enigmatic. Here, we report that SLFN5 is a critical factor for 53BP1 topological arrangement at DSBs. Using super-resolution imaging, we find that SLFN5 binds to 53BP1 chromatin domains to assemble a higher-order microdomain architecture by driving damaged chromatin dynamics at both DSBs and deprotected telomeres. Mechanistically, we propose that 53BP1 topology is shaped by two processes: (1) chromatin mobility driven by the SLFN5-LINC-microtubule axis and (2) the assembly of 53BP1 oligomers mediated by SLFN5. In mammals, SLFN5 deficiency disrupts the DSB repair topology and impairs non-homologous end joining, telomere fusions, class switch recombination, and sensitivity to poly (ADP-ribose) polymerase inhibitor. We establish a molecular mechanism that shapes higher-order chromatin topologies to safeguard genomic stability.

Indexed as

ChromatinDNA RepairAnimalsCell Cycle ProteinsDNA Breaks, Double-StrandedDNA End-Joining RepairMammalsTelomere-Binding ProteinsTumor Suppressor p53-Binding Protein 1Cell Cycle ProteinsChromatinTelomere-Binding ProteinsTumor Suppressor p53-Binding Protein 153BP1chromatin mobilitychromatin topologyclass switch recombinationDNA double-strand break repairnon-homologous end joiningPARP inhibitor sensitivitySLFN5super-resolution microscopytelomere fusions

Identifiers

PMID36854302
PMCPMC10467573
OpenAlexW4322505503

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.